FMO02533.5prime Sequence
1193 bp (1010 high quality bases) assembled on 2008-05-23
> FMO02533.5prime
CAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGAAGGGCAAG
GTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATGGCCGTGAT
CGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGGCCTAATCA
CTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCAAAACGAAC
AATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTTAATATCGC
TCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGTGGAATACT
TCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGATCATCTAC
GAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACCACCGACTC
GAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCTGGAGCTAC
AGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGCGGTCCGAG
GGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATCGAGTCGGT
GAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGAGATCGTGG
GCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGCTGCGACTG
GGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGCAAGTCAAA
GTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCGGTTGTCAC
GCTTCGAGAATGACCGGACAATCTCGTTCATTCCTCCGGACGGCGAGTTC
GAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCTGATTTGGAT
CGAATCAGTGATCGAGCGGCATGCCCACTCCCGTGTGGAGTACATGATTA
AGGCGAAGTCTCAGTTCAAGCGAAGATCGACGGCCAACACGTGGAAATCG
TCATACCAGTGCCCGCCGACGCGGACTCACCAGTTCAGACCACCATTGGA
GCTGCAGTACGCACGGAGCAGACGCATCATCTGACGATCATCGTCCGGGT
GCAGAGTTTCTAATTGCGTCAATTTCGTCTGCGAGCGTGAAAGCGAGACA
ATACGAGCAGCCGCCAATCAGGTCGCCTTCGGAATCCTCTACGTCGGCTC
AGGTGCCTATCTGGGAATCATCGAAGAGAGCGCTAATTATGTC
FMO02533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-RA | 1755 | CG9388-RA | 274..1395 | 6..1105 | 5025 | 97.7 | Plus |
| AP-2mu-RC | 1976 | CG7057-RC | 461..525 | 336..400 | 235 | 90.8 | Plus |
| AP-2mu-RB | 2025 | CG7057-RB | 461..525 | 336..400 | 235 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9558426..9559252 | 832..6 | 4135 | 100 | Minus |
| 3R | 32079331 | 3R | 9558217..9558368 | 981..831 | 710 | 99.3 | Minus |
| 3R | 32079331 | 3R | 22462983..22463047 | 336..400 | 235 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:41:42 has no hits.
FMO02533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:51 Download gff for
FMO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9388-RA | 267..1322 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:59 Download gff for
FMO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 269..1324 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:15 Download gff for
FMO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 269..1324 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:15 Download gff for
FMO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9558143..9558368 | 831..1044 | 94 | <- | Minus |
| 3R | 9558428..9559255 | 1..830 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:59 Download gff for
FMO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5383865..5384090 | 831..1044 | 94 | <- | Minus |
| arm_3R | 5384150..5384977 | 1..830 | 99 | | Minus |
