FMO02536.5prime Sequence
1192 bp (982 high quality bases) assembled on 2008-05-23
> FMO02536.5prime
CAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGGGTCGCAAT
GTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATTGTGGAGAA
ACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCTGATGCGCG
CCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGAAGAAGAAC
TCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGTCTCTCCAA
GATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGGCATCTCGC
CGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCTTTCACTCG
GCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACCAACATCAA
CTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGATCAAGAACC
TGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCTATCTGACC
AAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAGAAGATCAT
CCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACTGGAACCAA
AACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGCATCTGGCG
GAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGCATTGTTCG
TCCGAGTATGATCACCGCCGCTTGAAAGGAACCCATTCCCGGATGGACCA
TTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATCGAAAGGCGTA
CTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTACATACCCAT
CGATGTGGTGGTCAATGGCATCATAACCACTGGCTATTATGTCAACTCGC
TGCAAGCGAAGAACGAAGACGCCCGGCGATCTGCAGATCTCCACTGACCT
CAGCACATACAACCCTTTCGCTTTGAGCTGATGACGAAAAGATCAACAGC
TATCTGCACGACTTATCCTCTGAACAGTGCGTCTGAATCCAACTGCGTCT
GGTGAAAGAGCCTTCTGGCTTCGACTGACGCCAATTCTTGTTTCATTCAA
CCGCTATATCTGGAATTGTAGAATTGGAGGCGCAGCATCCTTGGTCCTTG
CCAGACGTTGACTCACATGAATACCTGGAAAGGTCTATCTTT
FMO02536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8306-RA | 2211 | CG8306-RA | 556..1655 | 8..1097 | 4930 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16590826..16591413 | 601..14 | 2940 | 100 | Minus |
| 2R | 25286936 | 2R | 16590264..16590588 | 1030..712 | 1145 | 95.1 | Minus |
| 2R | 25286936 | 2R | 16590653..16590762 | 711..602 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:11 has no hits.
FMO02536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:39 Download gff for
FMO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8306-RA | 623..1704 | 8..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:09 Download gff for
FMO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8306-RA | 556..1637 | 8..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:05 Download gff for
FMO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8306-RA | 556..1637 | 8..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:05 Download gff for
FMO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16590234..16590588 | 712..1056 | 94 | <- | Minus |
| 2R | 16590653..16590762 | 602..711 | 100 | <- | Minus |
| 2R | 16590826..16591417 | 9..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:09 Download gff for
FMO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12478158..12478267 | 602..711 | 100 | <- | Minus |
| arm_2R | 12477739..12478093 | 712..1056 | 94 | <- | Minus |
| arm_2R | 12478331..12478922 | 9..601 | 99 | | Minus |
