FMO02538.5prime Sequence
1223 bp (1041 high quality bases) assembled on 2008-05-23
> FMO02538.5prime
CAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGCAGTCCCGG
TTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCGGATGCTAC
CGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCGCTACCTTA
ATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCCAGAAGGAG
AAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATGATGCTTGC
CATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAGGGACATTC
TGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAATACATAGAG
CAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGATCCCACACA
GCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGAACAGCGCA
AGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCCAGCTGACG
GAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCAAAGCTGAT
CAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTGGAAGGAAG
CTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTAAGAGGTGT
GAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTTTGTAAGGT
GTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGGAAATAAGA
AAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAGAAGTACGC
GTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATAGAGCATGG
TGAATTTACCGATGAAGGAGGAAATTGGGTCATTGGAAAGGAAACGACCT
TAAAGATGAGATCAAGGAGACTGTTGATCTCACGACACGGCAGCAGTTGA
GGAGGAAATGAGACCAGTCAGACGATGTGGACCCAAAGTAGTCGCTTCCT
TACAAATTCACCTGAATCCATCGACTGTAAAATATGGCCTGGGCTACGTG
AAGTCTTACGGAGTACGCCATGTTAAATGATACTATCGGGCCATTGGACT
CTCTTACTGAAGTGGAAAAATCAGTTAAATCGCCCCGGAAAGAGGATCCG
AATCTACCAGCTTTCTAGACATTGGTTGGCGCCGCGGCCAGGTTAAGTGG
TCTAATCAATACTCTATAAACCC
FMO02538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i3-RC | 1540 | CG3217-RC | 325..1476 | 9..1147 | 5220 | 97.8 | Plus |
| CkIIalpha-i3-RA | 1275 | CG3217-RA | 60..1211 | 9..1147 | 5220 | 97.8 | Plus |
| CkIIalpha-i3-RB | 1289 | CG3217-RB | 53..1168 | 45..1147 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 709738..710283 | 554..9 | 2730 | 100 | Minus |
| 3L | 28110227 | 3L | 709332..709495 | 774..611 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 709212..709284 | 845..773 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 708746..708923 | 1126..956 | 355 | 91.6 | Minus |
| 3L | 28110227 | 3L | 709557..709613 | 611..555 | 285 | 100 | Minus |
| 3L | 28110227 | 3L | 709080..709156 | 919..844 | 240 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:49 has no hits.
FMO02538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:57 Download gff for
FMO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3217-RA | 173..1317 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:04 Download gff for
FMO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i3-RA | 77..1221 | 9..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:13 Download gff for
FMO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i3-RA | 60..1204 | 9..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:13 Download gff for
FMO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 708991..709023 | 920..951 | 96 | <- | Minus |
| 3L | 709080..709154 | 846..919 | 96 | <- | Minus |
| 3L | 709212..709283 | 774..845 | 100 | <- | Minus |
| 3L | 709333..709494 | 612..773 | 100 | <- | Minus |
| 3L | 709557..709613 | 555..611 | 100 | <- | Minus |
| 3L | 709738..710283 | 9..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:04 Download gff for
FMO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 708991..709023 | 920..951 | 96 | <- | Minus |
| arm_3L | 709080..709154 | 846..919 | 96 | <- | Minus |
| arm_3L | 709212..709283 | 774..845 | 100 | <- | Minus |
| arm_3L | 709333..709494 | 612..773 | 100 | <- | Minus |
| arm_3L | 709557..709613 | 555..611 | 100 | <- | Minus |
| arm_3L | 709738..710283 | 9..554 | 100 | | Minus |
