FMO02539.5prime Sequence
1194 bp (1040 high quality bases) assembled on 2008-05-23
> FMO02539.5prime
CAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGGAGTGGCGC
ATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTCGCCATCAT
CGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTTCCAGCGCA
ATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCGCAGTGCCC
GTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACCAAGCCCAT
ACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTATCTACGCCT
TGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCTACGTGGAC
TCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTCATGGTGTA
CCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCACAATGGAGT
ACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGCGGCCGTGG
GTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATCCTCCAGTA
CACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTGCGAGCTAT
GCGGCGTTTACGGCGAGGGCGAGTTTGCGGGCAACGTGGCCTTCCCCTAT
ATTGTGGTGGTCAACAATATATCCCAGTTCGTGGCCATGTATTGCCTGGT
GCTATTTTACCGTGCAAACAAGGAGGATCTCAAACCAATGAAGCCTATTC
CCAAATTCCTGTGCATCAAGGCTGTGGTGTTTTTCTCGTTTTTCCAAGGA
GTGCTACTCAACGTACTGGTATACTATAATATTATTAAAGGACATCTTTG
GGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGAATTTCCTC
ATCTGCATCGAAATGTTTATCGCGGCCGTGCTCACATCTACAGCTTCCCG
CACATCGTTTCACATCAACTCGCCGCAGTACTGAACACCCGAACATAGCT
GGTGTCCCGCCTTCTTCATGATGAAATATCGACATGCAGAGATGTCACGA
GCATCTGGGCGTCTGGGCAGTTCTGATCGTCTCAGAACCGCAAATACAGC
GCTTGGCGCATCCTCTCCTTCCACATGGATCGAATCTGATCCAAGCGTAA
TCGACGTCGGGCAACGTTCAAATCACAGACGGTGCGCACATGTG
FMO02539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5850-RC | 2935 | CG5850-RC | 558..1636 | 9..1073 | 4975 | 98.2 | Plus |
| CG5850-RG | 2744 | CG5850-RG | 364..1442 | 9..1073 | 4975 | 98.2 | Plus |
| CG5850-RF | 2678 | CG5850-RF | 364..1442 | 9..1073 | 4975 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9963093..9963392 | 308..9 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 9962735..9963013 | 586..308 | 1395 | 100 | Minus |
| 2L | 23513712 | 2L | 9962471..9962677 | 793..587 | 1035 | 100 | Minus |
| 2L | 23513712 | 2L | 9962318..9962414 | 891..794 | 440 | 99 | Minus |
| 2L | 23513712 | 2L | 9961931..9962062 | 1014..889 | 355 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:18 has no hits.
FMO02539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:59 Download gff for
FMO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RA | 370..1467 | 2..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:19 Download gff for
FMO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RF | 356..1453 | 2..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:54 Download gff for
FMO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RF | 356..1453 | 2..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:54 Download gff for
FMO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9963093..9963400 | 2..308 | 98 | | Minus |
| 2L | 9962318..9962414 | 794..891 | 98 | <- | Minus |
| 2L | 9962471..9962677 | 587..793 | 100 | <- | Minus |
| 2L | 9962735..9963012 | 309..586 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:19 Download gff for
FMO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9962318..9962414 | 794..891 | 98 | <- | Minus |
| arm_2L | 9962471..9962677 | 587..793 | 100 | <- | Minus |
| arm_2L | 9962735..9963012 | 309..586 | 100 | <- | Minus |
| arm_2L | 9963093..9963400 | 2..308 | 98 | | Minus |
