FMO02542.5prime Sequence
1197 bp (981 high quality bases) assembled on 2008-05-23
> FMO02542.5prime
CAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCGGCGGAGTA
GACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCAGCAGTGGC
GGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGCCGTGGCGG
CCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCCTGCAGGTG
CAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCCGCAGTGAC
CCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACAGGCTGTAG
TGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGGCGGCGGTC
CAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAATACGAATGG
CAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCACGGAGACGC
GCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCGAAGACGAG
ATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTGAAGCTGAT
ACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCAGGCGCCCA
GCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCCGGCCGCAA
GATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTGCAGAACAA
AACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCATTAAAGGCG
CCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGCAGGAACTG
GAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGCATTCTGCA
GAACGCTGGCAACGATACGCAGACGAAGGGAGTAGGCTTTATTCGATTCG
ATAAGCGGGAGGAGGCCACAAGGGCTATCATTGCTTTGACGGTACTACAC
CATCCAGCTGCACAGACCCCATAGTGTAAAATCCCCATACGCCCTGCAGC
ATCAGTAGATCATCAGCGCAGCTGCCTCGCTTTCCTCATTCCCACTGGTG
CACGCATCGGGAGCGCATGCCACGCCAGTGACAGGGATTGCCCGTTTTAC
ATGGCGGCGAAATGCTGGACTATGCTGCAATGGACTAGGAACGGTGTGGC
GGGCGGCCTCAACCTTGTGCCAGTGCCCTGGAGCACCCGAAATTTTC
FMO02542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| elav-RA | 2505 | CG4262-RA | 498..1686 | 9..1175 | 5035 | 96.2 | Plus |
| elav-RD | 10506 | CG4262-RD | 498..1686 | 9..1175 | 5035 | 96.2 | Plus |
| elav-RC | 2248 | CG4262-RC | 242..1429 | 10..1175 | 5030 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 518275..519242 | 976..10 | 4760 | 99.7 | Minus |
| X | 23542271 | X | 12942724..12942810 | 444..530 | 195 | 81.6 | Plus |
Blast to na_te.dros performed 2014-11-28 19:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6929 | 128..324 | 264 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6900 | 159..319 | 264 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 159..385 | 252 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6889 | 191..356 | 216 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6912 | 241..441 | 188 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2654 | 56..320 | 169 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2884 | 169..340 | 158 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 251..330 | 151 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6939 | 219..441 | 150 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2374 | 216..319 | 139 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 203..379 | 134 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 259..330 | 123 | 65.3 | Plus |
FMO02542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:01 Download gff for
FMO02542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4262-RA | 498..1466 | 9..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:00 Download gff for
FMO02542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elav-RD | 498..1466 | 9..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:21 Download gff for
FMO02542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elav-RD | 498..1466 | 9..976 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:21 Download gff for
FMO02542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 518275..519249 | 1..976 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:00 Download gff for
FMO02542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 412308..413282 | 1..976 | 99 | | Minus |
