FMO02543.5prime Sequence
1209 bp (998 high quality bases) assembled on 2008-05-23
> FMO02543.5prime
CAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGCTGAATGCG
GAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGCGAGTACAG
GAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCGGGAGGAGC
ACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTATCGTACGC
AGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCAGTGCGTCA
GGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCCGCGTCGCA
GCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGTTGGCCCGC
ACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACCAGTACTGT
ATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGAGGTGGTGA
CCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACACCACCGCCA
CGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGACGATGATTT
CGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCAAAATGAAG
AGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTGAAGGGGAG
TCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGACACAACGTT
TGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAGTGGACGGG
CTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCCTCAGTCGG
GAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTAGCTGTGGAA
GATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGCAGTCACCAG
GCCTAGTCAATCGTCTGGAATATTTCCTGATGTCAACGGATTAACGCCGC
GAAGAGCCTGTTCAATGGGATAGGCAAATGGCCGAAGCACCAGCACTCCG
AAATCTTTCTCGTCGAGGAATTGCATCTTATTAGACTAGAAGCGACTGCG
GCTAATAGGAATCAGAAATTACGAATTGTCTAGTTCTTTCTGGCACATCA
GCGTCAGCCGATAAGCTGCAGGCTCACAAGGTTGGCGAACCAGCTGGAAT
ATACAGGCGTGCCAATGACTCGAAATGGCAGGCCAAGCCAAAAGGGCAGA
CTTTCTTTT
FMO02543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-S332-RB | 1594 | CG5303-RB | 87..1227 | 9..1135 | 5110 | 97.4 | Plus |
| mei-S332-RA | 1504 | CG5303-RA | 196..1336 | 9..1135 | 5110 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22123534..22124163 | 484..1103 | 2490 | 96.3 | Plus |
| 2R | 25286936 | 2R | 22122998..22123474 | 9..485 | 2370 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:44 has no hits.
FMO02543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:41:54 Download gff for
FMO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5303-RA | 190..1302 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:48 Download gff for
FMO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..1302 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:12 Download gff for
FMO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..1302 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:12 Download gff for
FMO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22122992..22123474 | 1..485 | 98 | -> | Plus |
| 2R | 22123536..22124165 | 486..1106 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:48 Download gff for
FMO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18010497..18010979 | 1..485 | 98 | -> | Plus |
| arm_2R | 18011041..18011670 | 486..1106 | 96 | | Plus |
