FMO02544.5prime Sequence
1194 bp (1030 high quality bases) assembled on 2008-05-23
> FMO02544.5prime
CAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGAAAGTCAAA
GTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTTTCCTTGGA
CTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGAGCACTGGG
ATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTGAGGAGGAC
CGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTCATGGGCTG
CAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTCCAAGGAAA
TCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGAGAACATTT
GTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGCCGGGCTCC
ACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACATAAAACGCC
AGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATCTGCGTTTC
GGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTGCAAAACTC
CTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCGAGATCAGC
CATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATGATGAGGTA
ATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAAGCTGCCTA
TAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTATTAAGCTGA
ATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAAGGACGGCGTCAA
CATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCCAAATTGG
ACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTGGACAGGC
GGTGGCTTAGGCGACTGAGCAGGACGTGAGAGCTCGTATGTATCTGCTAA
AGAACATCGTATGTCTGGATATAATCCAAGGAAATTCGCTGATACGACGC
TAAAGAAACTATGTGAGATCGGACGATTACGTGACATGCAGTTGAGCCCA
CGTTTTCGAGAGAAGATCTACGCCTCACCATCGCCGACAATTGCTTGCTC
GCTAGCTTGGGAGTGGAAAGCGGCATGAATACAAAAATCGCACTTGGCAA
TATCTGTGAGCTGTGTAGCTCGCTGCCTCGCAGCGGAACCTCTA
FMO02544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31301-RA | 1520 | CG31301-RA | 101..1243 | 9..1117 | 4805 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15346305..15346684 | 9..388 | 1900 | 100 | Plus |
| 3R | 32079331 | 3R | 15346792..15347152 | 386..746 | 1805 | 100 | Plus |
| 3R | 32079331 | 3R | 15347207..15347372 | 745..911 | 785 | 99.4 | Plus |
| 3R | 32079331 | 3R | 15347545..15347607 | 1006..1066 | 185 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:23:09 has no hits.
FMO02544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:10 Download gff for
FMO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31301-RA | 67..1153 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:33 Download gff for
FMO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31301-RA | 93..1179 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:02 Download gff for
FMO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31301-RA | 93..1179 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:02 Download gff for
FMO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15346297..15346683 | 1..387 | 98 | -> | Plus |
| 3R | 15346794..15347152 | 388..746 | 100 | -> | Plus |
| 3R | 15347209..15347405 | 747..940 | 96 | -> | Plus |
| 3R | 15347464..15347480 | 941..956 | 94 | == | Plus |
| 3R | 15347545..15347600 | 1006..1059 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:33 Download gff for
FMO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11172019..11172405 | 1..387 | 98 | -> | Plus |
| arm_3R | 11172516..11172874 | 388..746 | 100 | -> | Plus |
| arm_3R | 11172931..11173127 | 747..940 | 96 | -> | Plus |
| arm_3R | 11173186..11173202 | 941..956 | 94 | == | Plus |
| arm_3R | 11173267..11173322 | 1006..1059 | 96 | == | Plus |
