FMO02545.5prime Sequence
1168 bp (1019 high quality bases) assembled on 2008-05-23
> FMO02545.5prime
CAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGGCGCTGTCG
CTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTGCTGGGAAT
GGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCAGCACGCCC
AGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGTGCAGGGAA
GTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAACTACCGGGA
GGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGTGACCGCGC
TCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAGTGCGTCGC
GCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCCGGACAGAT
CGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGAGGGACTGG
CCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGGAGCGCAGT
GCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGCTCCATCCT
GTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGATCGACCTAA
AGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGGCCTTCCAG
GAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACGCGCACCAT
GTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTGCGGCGTCT
CGGCCAAGACAGGCGTACGCTTCACCCAGCTACTGACGAAGATTCTCGAA
AGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAAAAGAAGCG
CCAAGAGCGACTGGCGGAGAGTGCGACGGGTTCAAAGCCAGTGATCATGT
GGAAGAGGACGGCCATGCCGTTCCCCTGGGATGTCGCTTCAGACCCACCG
CCGCACCCTGAACAGCATTTTCCTATGCACCTAGTCTGGTGCCCGAGTCG
CGAAATCGAAGACGAGAGGAGATGGAGGAGACGCGACGCACCGCCGAAGA
ACATACTTTCCACAGCTCTGCAATCACTGACTGCCCAGCGAGCAGCGGAC
ACTGCACAGGAATGAACGGCTCACCGCAGCTTCTTAGACACTTCTTTGGC
GCGGCGGCCCGGTGAGGT
FMO02545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3704-RA | 1515 | CG3704-RA | 73..1177 | 9..1094 | 4960 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 940152..940733 | 590..9 | 2910 | 100 | Minus |
| X | 23542271 | X | 939733..940088 | 942..589 | 1650 | 98.9 | Minus |
| X | 23542271 | X | 939541..939676 | 1067..942 | 215 | 87.5 | Minus |
Blast to na_te.dros performed 2014-11-28 21:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 817..855 | 123 | 79.5 | Plus |
FMO02545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:08 Download gff for
FMO02545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3704-RA | 62..1189 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:41 Download gff for
FMO02545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3704-RA | 66..1193 | 1..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:07 Download gff for
FMO02545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3704-RA | 66..1193 | 1..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:07 Download gff for
FMO02545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 939733..940086 | 591..941 | 98 | <- | Minus |
| X | 940152..940739 | 1..590 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:41 Download gff for
FMO02545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 833766..834119 | 591..941 | 98 | <- | Minus |
| arm_X | 834185..834772 | 1..590 | 99 | | Minus |
