FMO02546.5prime Sequence
1179 bp (1046 high quality bases) assembled on 2008-05-23
> FMO02546.5prime
CAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGCAGAACAAA
GTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTTCAAAATTT
TTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTTAGCCGGCT
TGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGTCGGGCTAC
GACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGCCAAGTAGT
CACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCAGCGCCGGC
AGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGCTGCACCAG
ACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTACTGGAAGAA
CATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGGATCGCTGA
GTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACACCATATTA
AACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTAAACACGGC
TTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCATACCGAGG
ACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCACCCAAAACC
TGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAGCTGGCGAA
CGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCTTCGCCATA
AGATGACCATGATCAGTCCGAAGGTGCTGCGCCAGCACAACATACCTTAC
AACAAGATCACGCAGGAAGCGGGCGAAATCATGATTACATTTCCCTTCGG
CTACCATGCCGGGTTCAATCATGGCTTCAACGGCGCCGAGTCGACCAACT
TTGCGTCGAAGCGTTGGATCGAGTACGGCAAGCGGGCTAGTATTTGCCGA
TGCCGCAGCGACATATAGATCTCGATGGAGACTTCGTACGCCGTTTCAGC
AGAGCGATACGATATGACTGAAAGTCAGACATGGGCTGTCATCCCGAGGA
GCGGTAAAATATGCGCCTGCAGCACCACCAATGAATGATACGAGAACGGA
AACTACTGCAGCATCGAGAAGACTCCGAACAGCGTCCCTGCGCATGATGA
CAACCGGATTCGCGAGAGTTCCAAAATAA
FMO02546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 2022 | CG15835-RA | 73..1175 | 9..1096 | 5100 | 98.2 | Plus |
| Kdm4A-RB | 2004 | CG15835-RB | 73..1154 | 9..1079 | 5090 | 98.6 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 1117..1511 | 543..937 | 490 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923699..7924533 | 1079..256 | 3630 | 97.8 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 164..9 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 257..165 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 13186792..13186924 | 937..805 | 425 | 88 | Minus |
| 2R | 25286936 | 2R | 13187132..13187244 | 655..543 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:35 has no hits.
FMO02546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:52 Download gff for
FMO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 60..1161 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:18 Download gff for
FMO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 65..1166 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:14 Download gff for
FMO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 65..1166 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:14 Download gff for
FMO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923687..7924532 | 257..1088 | 97 | <- | Minus |
| 2R | 7924598..7924689 | 165..256 | 100 | <- | Minus |
| 2R | 7924761..7924923 | 1..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:18 Download gff for
FMO02546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3811192..3812037 | 257..1088 | 97 | <- | Minus |
| arm_2R | 3812103..3812194 | 165..256 | 100 | <- | Minus |
| arm_2R | 3812266..3812428 | 1..164 | 97 | | Minus |
