FMO02547.5prime Sequence
1213 bp (994 high quality bases) assembled on 2008-05-23
> FMO02547.5prime
CAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGAGCACCCTG
CTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACCCCGACCAT
ATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCACAGTGGAGT
TCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGTTCCTGAAG
ACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTGGTCATCAA
GGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCACCTACAAGC
TGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACACCTGCCAG
GTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAGCTATCGGT
GCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGTGGTGGCCA
GCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCTATCCCACA
CCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCAACTGATAG
TGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAAGAAGGAGG
ATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCAAGGGCGAC
AGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATCACCGTGCC
GCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTTGGAGTGCC
ACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGACCAAGGACGACATC
CAGCTGGCCAACACCAGCACTACAGCATCTCGCACTTCGCCACCGCCGAC
GAGTATACCGACTCGACGCTCCGTGTGATCACCGTTGAGAAGCGCCAGTA
CGGAGATTATGTGTGCAAGGCCACCAATCGCTTTGGAGAGGCGGAGGCGC
GCGTCAATCTCTTCGAGACGATCATTCCCGTGTGCCACCGGCCTGTGACA
GCGTACATCGCCGAACCGAGGAATGGTGTTCCGCCACTTCGTCGCCTCTG
TGGGCATCCTGGCGGCGTTGCTCTTGGCCAAGAACAGCTTTCTAGAAACA
ATTCGTTGGACGCGCGGGCCCAGGTATGGTCATTAAACTAATCTAATCGT
AGCCATAGTACACCTAGCTAGGAAATCGTGCTAGGAACATGTGTGTGGAT
TCTCCTCCCACCA
FMO02547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lac-RA | 2156 | CG12369-RA | 328..1402 | 9..1080 | 5090 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12453517..12454054 | 9..546 | 2690 | 100 | Plus |
| 2R | 25286936 | 2R | 12464339..12464876 | 546..1080 | 2205 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:52 has no hits.
FMO02547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:24 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:41 Download gff for
FMO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RA | 328..1409 | 9..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:02 Download gff for
FMO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RA | 328..1409 | 9..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:02 Download gff for
FMO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12453517..12454054 | 9..546 | 100 | -> | Plus |
| 2R | 12464340..12464871 | 547..1075 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:41 Download gff for
FMO02547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8341022..8341559 | 9..546 | 100 | -> | Plus |
| arm_2R | 8351845..8352376 | 547..1075 | 97 | == | Plus |
