FMO02548.5prime Sequence
1209 bp (968 high quality bases) assembled on 2008-05-23
> FMO02548.5prime
CAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGCCGCCCATT
GTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCAGCGGAGGC
GTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCACGACGGGGA
TCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGTACGACCAG
CTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTGGTCAGCCC
CAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATCCACTGTGC
TGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACGTCTCCTCC
GTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTGGCAGTGCC
CACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGTTATGCCCG
TCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGAGCTACGGA
GGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAGAGTGGCGT
TAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAAGGTGCGAA
CCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCAACGGCGAC
GAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTCAGCGACAA
CGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGCCTACGAGA
TCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATCTCATCCTG
CGCTCCATTCTCGACTGCACACTATACGTGCGACGTGCCCTGATCGAGAG
TGTGTTCCTCGTGGGCGGCGGCTCAATGGTTCAAGGGTCTGCTGGCCCGC
TCGCCAGGAGCTGCAGCATCTGCTCACCGAGGATCCGATTCTACGCCGAA
CGCTTCCATGGCGAGCTGCAGTTCAAGTTTTCAATGCTGTCGGCAGCATA
ACTTTAATGCTTGCTGGGCGGGTCTATGTGCGGGCTCGACGGATCTTCAT
CCAACCGATCGCTGATCAAGGAACGTATCTAAAAGCGAGCCGGTTCCGAC
TGGACCACCCTTGTGCGATATATGGGCGAAGCTCGCTAAGCCTTCTTAAC
ATTCGTGGCCCGGCAGGTTAGGTGAACTATCTCACTCCTATACCGACGAT
CGCCTTAGA
FMO02548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp10-RB | 1536 | CG12235-RB | 261..1377 | 9..1120 | 4995 | 97.3 | Plus |
| Arp10-RA | 1374 | CG12235-RA | 99..1215 | 9..1120 | 4995 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19644819..19645582 | 995..233 | 3555 | 98.8 | Minus |
| X | 23542271 | X | 19645632..19645785 | 233..80 | 770 | 100 | Minus |
| X | 23542271 | X | 19645845..19645916 | 80..9 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:24:38 has no hits.
FMO02548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:54 Download gff for
FMO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12235-RA | 123..1146 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:34 Download gff for
FMO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..1114 | 1..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:51 Download gff for
FMO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp10-RA | 91..1114 | 1..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:51 Download gff for
FMO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19644819..19645582 | 233..995 | 98 | <- | Minus |
| X | 19645633..19645785 | 80..232 | 100 | <- | Minus |
| X | 19645846..19645924 | 1..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:34 Download gff for
FMO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19538852..19539615 | 233..995 | 98 | <- | Minus |
| arm_X | 19539666..19539818 | 80..232 | 100 | <- | Minus |
| arm_X | 19539879..19539957 | 1..79 | 96 | | Minus |
