FMO02549.5prime Sequence
1225 bp (1021 high quality bases) assembled on 2008-05-23
> FMO02549.5prime
CAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCTTCGACGAC
GCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGGAAAAAGAA
CACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGAATGGCCCT
CGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATGGCAAGGAC
TACTCGGTACATCGTCTTATACTGGGCACACACACATCTGACGAGCAGAA
CCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGCCCAGTTCG
ATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCTTTGGATCG
GTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAGGGCGAAGT
GAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGCCACCAAGA
CGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATCCCAGCAAG
CCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGCGGTCATCA
AAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGGCTATTTGC
TGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCAATGCCACA
CCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACCGGCCACAC
CGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTCTCTGTTCG
GATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGCGCAACAAC
AACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCGGAAGTCAA
TTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGGCCACGGGCTCC
GCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCAGCTAAAACTA
CATTCTTTCGGGTCGCACAAGGACGAGATCTTCCAAGTGCAGTGGTTCGC
CGCATACGAGACTATTCTCGCCTTCTCGGGCACCTGACGCGGCTACCGTC
TGGGATTGGTCCAAATCGCCAGAGCCAAGTACGAAGAATGCTGAGGAACG
GGACCACCGAGCCTGTCTCTTCATTCCATGGGCGGTCACACTGCCAGAAT
AGCAATTCTCGTTGGTATCTCCATGGAACCATGTTATCATATTGGTCTCT
GCGGTAGTTCCGGAGGAGCACTCAA
FMO02549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caf1-RA | 1828 | CG4236-RA | 313..1473 | 4..1162 | 5140 | 97.1 | Plus |
| Caf1-RB | 1825 | CG4236-RB | 313..1470 | 4..1162 | 5085 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15225965..15226527 | 30..592 | 2815 | 100 | Plus |
| 3R | 32079331 | 3R | 15226636..15227078 | 591..1033 | 1965 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:23:27 has no hits.
FMO02549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:15 Download gff for
FMO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4236-RA | 320..1385 | 1..1065 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:47 Download gff for
FMO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RA | 311..1376 | 1..1065 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:12 Download gff for
FMO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RA | 311..1376 | 1..1065 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:12 Download gff for
FMO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15225966..15226526 | 31..591 | 100 | -> | Plus |
| 3R | 15226637..15227112 | 592..1065 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:47 Download gff for
FMO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11051688..11052248 | 31..591 | 100 | -> | Plus |
| arm_3R | 11052359..11052834 | 592..1065 | 97 | == | Plus |
