FMO02551.5prime Sequence
1200 bp (1040 high quality bases) assembled on 2008-05-23
> FMO02551.5prime
CAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAATCCCAGCTA
AGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCAGCAACGAT
AGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGTATCCCAGG
CGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGATGCCTAGT
CCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAGCTATCCAA
GTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGGCTATGCCA
TGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCACCCTGGGC
ACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCAGTATCACGAAGT
TCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCTCGTCACGG
GGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGTCGGCAACT
GCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACGGCGGCGCT
GGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACCGATGAAGC
GTATCAGCATAGTCAATACCTGGGTGGGATCGATAGTGGGCGCCATTCCT
CCGCTGATGGGATGGGCTGGTTGTGCAGCCACCCTGGACGCCGGCGCCAT
GATCCTAGCCGGAGTGCTGTACGCGTGGCAGTTCCCGCACTTCAACGCTC
TGTCGTGGAACCTCCGGCCGGATTATTCACGTGCCGGCTACCGAATGATG
GCCGTTACCAATCCGGGTCTTTGTCGCCGCACTGCGCTGCGATATTCGGT
GGCTATTGTCGGACTTTCAGCCATGGCACCCGTACTGGACGTCACGAACT
ACTGGTTTGCCTTGGAAACACTACCTCTGACGCGTACTTCGCTACCTTGC
GTACAGTTTCATGAAAAGTCAGATAGTGGGAGCTCGCGGAAGCTGTTCCG
ATTTCACTGATAACCTGCCGCCTGATGCTGCTATTTCTGACATAGGAGAA
TGAATTCAGCAAACCCGCCGTGAGGAGAACAAAGATTCACGTAATGGCAT
AAAGCATTCTGCTAACGATCTGTTATGTCTTGCCGTGCGGTACGAGACCT
GGACAGCTCTAACATTGCTTGGGCGCGCGCGGCCAGGTGAGTGGTACCTA
FMO02551.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5037-RA | 1473 | CG5037-RA | 140..1265 | 9..1114 | 5105 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10331988..10332666 | 265..942 | 3345 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10331742..10331930 | 76..264 | 930 | 99.5 | Plus |
| 2L | 23513712 | 2L | 10331610..10331681 | 9..80 | 360 | 100 | Plus |
| 2L | 23513712 | 2L | 10332745..10332835 | 955..1041 | 275 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:08 has no hits.
FMO02551.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:17 Download gff for
FMO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5037-RA | 148..1280 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:41 Download gff for
FMO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5037-RA | 140..1272 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:30 Download gff for
FMO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5037-RA | 140..1272 | 9..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:30 Download gff for
FMO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10331610..10331681 | 9..80 | 100 | -> | Plus |
| 2L | 10331747..10331930 | 81..264 | 100 | -> | Plus |
| 2L | 10331988..10332674 | 265..949 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:41 Download gff for
FMO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10331610..10331681 | 9..80 | 100 | -> | Plus |
| arm_2L | 10331747..10331930 | 81..264 | 100 | -> | Plus |
| arm_2L | 10331988..10332674 | 265..949 | 99 | -> | Plus |
