FMO02552.5prime Sequence
1221 bp (1016 high quality bases) assembled on 2008-05-23
> FMO02552.5prime
CAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTCTCCTGGTC
CTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTGGTCTCCAA
CGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTACAATCAGC
TGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGTTGGGCGAG
CTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAGAGCCTGGA
GCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAGCCAGATAG
AGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGTCGGACCGC
TTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAGAACGACGA
GTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCCCCCAGCCG
CGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATCAGAAGCGC
CTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCCAGCGTGGC
CGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCAGAAGCGCC
TCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCGAAGCCAAG
CTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCGAAGAACGC
TGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGGCGGCCAGG
TGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGGTTGGCCTG
AGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGATACCCTGAA
TGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAAGTCAGCTG
CGACGGAGGCCACGGAGCGACTGCAGCGGCGGAGGCCACATTCAAGGCGG
ACGTTCGCCAGCTGTCGCGGACGTGGGCATTCTCAACAGCCACTTCGCTC
GACTAACGAGAGCATGCCAAGCTGACGAGGACTCGAGCGCTCGGTAAGTT
CCACAACATCATGATGACCACTCGGAGGTCTGCTGGACACCGCAAGCGCA
AGGTGAACTCGACAACTGACGTGGGTGCCACCGGGTTGCAGCTGCTGGCG
GGAGAATTGTCACTGCTTGGACTGCCACATGCTCCTGTAATGAGAGTGCC
CTTCTCATCAGACCTGTAGCT
FMO02552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-RC | 2350 | CG5080-RC | 532..1684 | 9..1151 | 5185 | 97.7 | Plus |
CG5080-RA | 2617 | CG5080-RA | 799..1951 | 9..1151 | 5185 | 97.7 | Plus |
CG5080-RB | 2007 | CG5080-RB | 189..1341 | 9..1151 | 5185 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1161290..1161870 | 897..317 | 2905 | 100 | Minus |
2L | 23513712 | 2L | 1161927..1162146 | 317..98 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 1161018..1161222 | 1090..895 | 470 | 92.2 | Minus |
2L | 23513712 | 2L | 1163000..1163088 | 97..9 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:37 has no hits.
FMO02552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:19 Download gff for
FMO02552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RA | 246..1410 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:43 Download gff for
FMO02552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 185..1349 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:28 Download gff for
FMO02552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 185..1349 | 1..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:28 Download gff for
FMO02552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1161927..1162146 | 98..317 | 100 | <- | Minus |
2L | 1163000..1163092 | 1..97 | 95 | | Minus |
2L | 1161290..1161869 | 318..897 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:43 Download gff for
FMO02552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1161927..1162146 | 98..317 | 100 | <- | Minus |
arm_2L | 1163000..1163092 | 1..97 | 95 | | Minus |
arm_2L | 1161290..1161869 | 318..897 | 100 | <- | Minus |