FMO02553.5prime Sequence
1184 bp (999 high quality bases) assembled on 2008-05-23
> FMO02553.5prime
CAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGGACACCGTC
AGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCCGTGGTCGG
GGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGAGGCGCGAA
CAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCAGCGGCACC
ATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGTGGCACGGA
GGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACAAGGTGGCG
CCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACGAGCAGGAT
GGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCACGAAGACTG
CCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCACAATATCT
GCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAGCTGCTCTG
GTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCTCTACACAT
GGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGTGGGAGTGG
AGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCAGCAAGGGC
TTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCCTTCATTTC
GGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCGGCAGGTGG
GAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGGTACCACTT
CTGAGCAAAGATCACGAGCGGACCAATAAAATTGCCAACGCTATATATGA
ACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCAGAGCAATA
TCCTTCTGGTAGAGATAACCCAACCCAAACTGACGGCCAGTGAGTTCTCC
ACCCGGTTGAGCATCGTGATGCTGTGAGTGGAGCGGAGTGAGACAAAACG
AGCGATCGTGTGAGCTAGTGCCGGGATGGGCATTGCGAGACTTGTGCTCT
ACATCAGGTGACGATGAGCCAGTGACTGGCAATCAGGAGCTGAGTACGTC
ATCGGCAGATACGAACAAGCAATTTCCCAGACCGAGGCCTTCAGAAACAT
TCGTGGGCAGCGCGCGGCCTAGGTAAGTGTCCTC
FMO02553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 87..1231 | 9..1130 | 5060 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 703..293 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 23604814..23605024 | 219..9 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 23602977..23603113 | 840..704 | 685 | 100 | Minus |
3R | 32079331 | 3R | 23602792..23602919 | 967..840 | 640 | 100 | Minus |
3R | 32079331 | 3R | 23603825..23603902 | 297..220 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:19 has no hits.
FMO02553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:20 Download gff for
FMO02553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 79..1037 | 9..967 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:04 Download gff for
FMO02553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1045 | 9..967 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:05 Download gff for
FMO02553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1045 | 9..967 | 100 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:05 Download gff for
FMO02553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23602792..23602918 | 841..967 | 100 | <- | Minus |
3R | 23602977..23603113 | 704..840 | 100 | <- | Minus |
3R | 23603354..23603762 | 295..703 | 100 | <- | Minus |
3R | 23603828..23603902 | 220..294 | 100 | <- | Minus |
3R | 23604814..23605030 | 1..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:04 Download gff for
FMO02553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19428699..19428835 | 704..840 | 100 | <- | Minus |
arm_3R | 19428514..19428640 | 841..967 | 100 | <- | Minus |
arm_3R | 19429076..19429484 | 295..703 | 100 | <- | Minus |
arm_3R | 19429550..19429624 | 220..294 | 100 | <- | Minus |
arm_3R | 19430536..19430752 | 1..219 | 98 | | Minus |