FMO02556.5prime Sequence
1201 bp (1049 high quality bases) assembled on 2008-05-23
> FMO02556.5prime
CAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCATGCAGGGA
AATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCACGCCTACAA
TTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCGCAAGGTGC
AGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGCGCACCACA
CTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCTTGTGTGCT
CCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAAGATGGGCG
CCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGCTGCGTAAG
CCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCCTGCGATCC
CACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGGATTAGCAC
ACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCAAGATTGAG
GTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACACGAGAAGGG
ACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCGGCACGTCA
ACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGATTCGTGCGC
GATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATGGATTACAA
GCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGCATCCTCGG
GATTTAAGCACTCCTTAAGAGAAATTCTACAGGATCCCGCCGTGCTGGCC
AAGATGTCTGACACCAAAGGCAGCTGGCGAGGTCAAGGCCCTGGAACAAT
TCTACATGATGCTGCAATGTGAGCCCGCCAAGGCCTTCTATGGAAAGAAA
CATGTCCTCCAAGCCGCCGAGTCGCAGCCATCGAAACGCTGCTGATCTCG
GACACCTCTTTAGATGCCAGACGTTAGTCTGAGAAAGGATATGTCAATCT
GGTCGATCATTCGCGATGCTGGGGAGAAGTCAAAATCTTTTCGAGCATGC
CCATCTCAGGAGAACACTGCTCACTACTGATGCAGCCTCCTGCCCTTTCC
GAGCCGACTGAGAACGCACATGTATAGTGATAGATGACGGCAGCGGATGC
AATCCAATAGCACTCTAGACTTCTCTTAGACACATCCTTTTTGAGAGCAC
A
FMO02556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pelo-RA | 2045 | CG3959-RA | 244..1307 | 9..1066 | 5110 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9701152..9701874 | 49..771 | 3615 | 100 | Plus |
| 2L | 23513712 | 2L | 9701928..9702112 | 770..954 | 830 | 98.9 | Plus |
| 2L | 23513712 | 2L | 9706646..9706746 | 969..1065 | 310 | 94.1 | Plus |
| 2L | 23513712 | 2L | 9701053..9701093 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:22 has no hits.
FMO02556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:24 Download gff for
FMO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3959-RA | 249..1338 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:07 Download gff for
FMO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 235..1324 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:07 Download gff for
FMO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 235..1324 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:07 Download gff for
FMO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9701044..9701093 | 1..49 | 92 | -> | Plus |
| 2L | 9701153..9701874 | 50..771 | 100 | -> | Plus |
| 2L | 9701930..9702122 | 772..963 | 98 | -> | Plus |
| 2L | 9706640..9706746 | 964..1065 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:07 Download gff for
FMO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9701044..9701093 | 1..49 | 92 | -> | Plus |
| arm_2L | 9701153..9701874 | 50..771 | 100 | -> | Plus |
| arm_2L | 9701930..9702122 | 772..963 | 98 | -> | Plus |
| arm_2L | 9706640..9706746 | 964..1065 | 94 | == | Plus |
