FMO02562.5prime Sequence
1230 bp (1028 high quality bases) assembled on 2008-05-23
> FMO02562.5prime
CAGTCGACATGGCGAGCGGGACAAGCGGCACAAGCAGCAGTGAAACGGCC
CAGTCGACGGACATGGCACCATCATCGGCCGAGAAGTGGGGCTTCCCTTT
GATTGAGCTCTACCGCCTGGCATTCACGTTCTACAAGCGGAACTCCGGCA
AGGCCATCCACTTGTCGTACGAGGACAACCTCAAGCTGATCGCCTTCAAG
CAGCAGGCGGCGCTGGGCCCCTTCAACACGAGTCGCGCCCCGGCGCTGGG
CGTCCTGGACGTGATCGGACGCGACCGGCAGCAGCACTGGCAGCTGCTCG
GTGAGATAACGCGCGAGCAGGCGATGGAGGGGTTCGTCGACCTGCTGGAC
ACAATGTGCAGCGCCTTTCGGCCGTACATTGAGGCCGTGCGGCAGGACCG
CGACGAGACGCTGCGCAAGGAGCTGCGCCTCATGGAGGAGAAGAAGGAGG
CACGCGAGCGGCAGGAGAACGCCCAGCAGGAGCTGCTCGAGGAGGGTTAC
AAGGAGGAGCTGCAGCGCCGCCAGCTGCAGGACGCACTCAACAAGCAGAC
TTACCAGCAGTTTAAGCTGTACGCTGAGAAGCAGTTCCCCGGAAACCCCG
AACAGCAGGCCGTGCTTATCCACCAGCTGCAGCGGGAGCACTATCACCAG
TACATGCAACAGCTTCATCTGCAGAACCAGAACCAGAATCAGAATCAGAA
CACGGAGGACAAGGGACACCAGGAAGCAGAACACGTCCCTGGCAATAACA
ACAACAGCTCAACCGACTTGCCCAACGCCATGGAGGGACTGAAGCTCGGT
GAGGTCGAGACACAGCAGCACCAGCAGCTGGCCGAGCAGCAAGACGGGCA
TGTAGAGCAGACGTTGGAGGGCGTTGGGCAGGAACAGCACGGCGAGGAAG
AGTACGACGACTACGTTATGATCTGCCCGGCCAAGATCTGGACTCGTCCC
GACATCGAGCAGTTAAGACTGAGTGTCGCGGCGATGGGGACGGCGTCATC
ACCAATGGAACACGGCGACCGGTGACGTCGTGGTGCCCACCACATGAACG
CAGTGCATCTTTGGGAGTTCGCCACGACAGCTTCGACATTCGGCTTCGCA
TCTACTTCAAGTGGTCAAGTCGTGAACACAAGGGTGAACGGTGCATGTAA
GCAACTCCGACAAGAGACAGGATAGTGCGTGACAGACTTCTACTTATTCT
CACACCGGGAAACCTGTGAAGTCTGTGGAT
FMO02562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14232-RB | 1874 | CG14232-RB | 165..1329 | 8..1161 | 5175 | 97.4 | Plus |
| CG14232-RA | 1905 | CG14232-RA | 135..1299 | 8..1161 | 5175 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19703403..19703830 | 566..139 | 2140 | 100 | Minus |
| X | 23542271 | X | 19702751..19703199 | 1009..565 | 2050 | 98.7 | Minus |
| X | 23542271 | X | 19703888..19704019 | 139..8 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:14 has no hits.
FMO02562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:31 Download gff for
FMO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14232-RA | 121..1256 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:43 Download gff for
FMO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14232-RA | 129..1264 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:33 Download gff for
FMO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14232-RA | 129..1264 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:33 Download gff for
FMO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19702733..19703197 | 567..1027 | 98 | <- | Minus |
| X | 19703403..19703830 | 139..566 | 100 | <- | Minus |
| X | 19703889..19704022 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:43 Download gff for
FMO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19596766..19597230 | 567..1027 | 98 | <- | Minus |
| arm_X | 19597436..19597863 | 139..566 | 100 | <- | Minus |
| arm_X | 19597922..19598055 | 1..138 | 97 | | Minus |
