FMO02563.5prime Sequence
1184 bp (978 high quality bases) assembled on 2008-05-23
> FMO02563.5prime
CAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGGAGCGTGCC
AACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAGAAGCGCAA
CTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCATGCATAGGG
AGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGCCTCTCCTG
CCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAGACGAAGGC
CCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCCCTTTTCGA
ATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAACGAGTCACC
GACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAACTGGAGGT
GCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAACAACATCA
ACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGGCCAGAAGG
TTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGTCAGCAGCA
TGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGAGGTGGTCG
CTCTGCTCGCCAAGGCCAAGAATCAGACGAGTGAGAAGAAAGTATTTGTG
TATGACGTCGAGCACGAACGGCGCCGCAAGGAGCAGCTGGAGAAGCTGTT
CAAACGCACGACACAACAGGTGGAGGAGGAGAATATGCTTATCAACGAGA
TGAAGAAAATCGAGGCGCGCAAAAAGGAACGCGAGCGCAAGACACAAGAC
TTGCAGAAGCTTATTTCGCAAGCGGATCAGCAGATGAGCACGCATCGAAT
ACGCCGAGTACGCGAAAGTACGAGAAGAAGCTGCACAAAAGAAGGTACAT
CAGCAGCCGCCGACCCTCCAGGGTGGACTCGGTGGTTAATGCCATAGAGA
TCGGTAGCAGCGGCATCAGTTCGCGGACCTGCGCGGTCCAGGGCTTCTCT
GCGCTCGCAGAGATGAAGCTGCCGGCGAATATCGGCCAGCGCCAAAGTGA
AGGCCTTCGAGCAGGCATCAGAGTTAAGTGATCCCGCTCCGCGCGCCCAC
GGAGGACTTGAACCCCTCAACGACTCGTCGAATTGGATGCCTTGCGGCTT
CGACGGCTATTCACGTGCGGTTCTATCGAAAATG
FMO02563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DMAP1-RA | 1584 | CG11132-RA | 135..1242 | 8..1107 | 5140 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20644777..20645349 | 498..1067 | 2450 | 97.9 | Plus |
| 2R | 25286936 | 2R | 20644328..20644720 | 109..501 | 1965 | 100 | Plus |
| 2R | 25286936 | 2R | 20644170..20644272 | 8..110 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:58 has no hits.
FMO02563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:32 Download gff for
FMO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11132-RA | 133..1260 | 8..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:58 Download gff for
FMO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DMAP1-RA | 135..1262 | 8..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:42 Download gff for
FMO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DMAP1-RA | 135..1262 | 8..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:42 Download gff for
FMO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20644170..20644271 | 8..109 | 100 | -> | Plus |
| 2R | 20644329..20644718 | 110..499 | 100 | -> | Plus |
| 2R | 20644779..20645368 | 500..1080 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:58 Download gff for
FMO02563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16531675..16531776 | 8..109 | 100 | -> | Plus |
| arm_2R | 16531834..16532223 | 110..499 | 100 | -> | Plus |
| arm_2R | 16532284..16532873 | 500..1080 | 96 | -> | Plus |
