FMO02565.5prime Sequence
1207 bp (1015 high quality bases) assembled on 2008-05-23
> FMO02565.5prime
CAGTCGACATGGCAGGCAGGCTACCGGCATGCGTAATCGATGTGGGCACC
GGCTACTCCAAACTGGGATTTGCCGGGAATAAAGAGCCGCAGTTCATTAT
TCCCTCGGCGATTGCCATCAAGGAGTCGGCACGAGTGGGAGACACCAACA
CACGGCGCATCACAAAGGGCATCGAGGACCTGGACTTCTTCATCGGCGAT
GAGGCCTTCGATGCCACCGGCTACTCCATCAAGTATCCGGTGCGTCATGG
TCTGGTGGAGGACTGGGACTTGATGGAGCGCTTTCTGGAGCAGTGCGTCT
TTAAGTATCTGCGCGCCGAGCCTGAGGATCACTACTTCCTGCTGACTGAG
CCGCCGCTAAATACGCCCGAAAATCGGGAGTACACCGCGGAGATAATGTT
TGAGACGTTCAACGTTCCTGGTCTGTATATCGCCGTCCAGGCGGTGCTTG
CCCTAGCCGCCAGTTGGGCCTCCCGGTCCGCAGAGGAGCGTACCCTTACA
GGCATCGTGGTGGACAGCGGCGATGGAGTGACGCACGTCATACCCGTGGC
CGAGGGCTATGTGATCGGCTCCTGCATCAAGCACATTCCCATCGCGGGCC
GCAATATCACCTCGTTCATCCAGAGCCTGCTACGCGAACGGGAGGTGGGC
ATTCCGCCGGAACAGAGCCTCGAGACTGCTAAAGCGATCAAGGAGAAGCA
CTGCTACATCTGTCCCGATATCGCCAAAGAATTTGCCAAGTACGACACGG
AGCCGGGCAAGTGGATACGCAACTTTAGCGGCGTTAACACGGTAACCAAG
GCGCCGTTCAATGTGGACGTGGGCTACGAGCGATTCCTGGGACCCGAGAT
CTTCTTCCATCCCGAGTTCTCAAACCCCGACTTTACCATTCCACTGTCGG
AAATAGTGGATAATGTCATCCAAAACTGCCCAATCGATGTGCGGCGTCCT
CTATACAATACATTGTTCTGAGCGGTGGATCACGATGTTCAAGGACTTCG
GCAGAGTGCAGCGAGATATTCAGGCGGATCGGGGACCCACGTCTCGATCA
GCGAGATTGTCGAGGACGCATAAGCCAAATCAATGATGTTCAGGTGATAC
GCACCATGCAAGGTACGCCGTGTGGATGGAGCACTGTTGCTCACGTCGGA
TCATCATGATGTCCACGAGGCGCACAGAGGAAGGATGGTCCGCACATTGT
GGCGTCC
FMO02565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp3-RB | 1585 | CG7558-RB | 177..1311 | 8..1125 | 5150 | 97.8 | Plus |
| Arp3-RA | 1983 | CG7558-RA | 177..1311 | 8..1125 | 5150 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8114336..8114794 | 1004..548 | 2195 | 99.6 | Minus |
| 3L | 28110227 | 3L | 8115029..8115346 | 549..232 | 1590 | 100 | Minus |
| 3L | 28110227 | 3L | 8115408..8115589 | 233..52 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 8115682..8115726 | 52..8 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:25 has no hits.
FMO02565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:37 Download gff for
FMO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7558-RA | 168..1191 | 1..1019 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:09 Download gff for
FMO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 170..1193 | 1..1019 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:09 Download gff for
FMO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp3-RA | 170..1193 | 1..1019 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:09 Download gff for
FMO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8115682..8115733 | 1..52 | 96 | | Minus |
| 3L | 8114318..8114793 | 549..1019 | 98 | <- | Minus |
| 3L | 8115030..8115344 | 234..548 | 100 | <- | Minus |
| 3L | 8115408..8115588 | 53..233 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:09 Download gff for
FMO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8108508..8108688 | 53..233 | 100 | <- | Minus |
| arm_3L | 8108782..8108833 | 1..52 | 96 | | Minus |
| arm_3L | 8108130..8108444 | 234..548 | 100 | <- | Minus |
| arm_3L | 8107418..8107893 | 549..1019 | 98 | <- | Minus |
