FMO02566.5prime Sequence
896 bp (896 high quality bases) assembled on 2008-05-23
> FMO02566.5prime
CAGTCGACATGCCCTGCTCGGCCGTAACCCTATCTATAGCGACGATCTGC
GCGATCATCGCCACCGCCCTGCTGGCGATCGCCTTCTCCACGGATAATTG
GCTGCACTACGATGTCTGGCGCAACCAGATACAGTCCTTTGCCGCCAAGC
ACTCGGATGCGGAGTCGTTGTTGCACAACATGAACGTGAAGTACTATTAC
TACACGAGGACACGAGGCTTGTTCCGGATCTGCTATCCCAAGGAGCGGCC
GCCAGTTTCAGCGGTGCCCACCTATTTGTCACCGATCGAGACACACTGCT
CGAACATCGACTACTTCCCGCAGGCGGAGGACGAGAAGATCGCCAACGAG
GACGCCACATCGCGTCTCCATTTGGCCCGCTCCTGCATCGCTCTGTTCAT
CATCAGCTTTGTGACCATCTTCTGTGCGTTCTGGACCGGATTATCCGGCT
GCTGGAAGCGGTCGTCGGGCGCCATCACAGCCACCTCGATACTGCTGCTA
GTCACCTGTCTCCTGGCCGCCGGCGCCATGGGACTCTGGCACACCGTCGA
GTTCTTTGAGAAGGAGAAGGTCGTGGGCGAGGATTACTTCCAGCAGTGGA
ACACGGTCCTGCGCGACAACACGAAGATCGCCTACGACTGGTCGTACATC
GTGGCCTGAGCAGGAATCGGAACCTGTCTCCTGGCGTCCATTCTGCTCTC
CGGCGCGGCCGTTTGCCTGCGCAACGAGCGGGAGAAGGAGGAGCAGCTGA
ACCTGCAGTACCTGATGCCAGTTTACTCGCAGAAGCAGCCACCCTATCCC
CCTTATGCCAACTACGCCCAGCCGCAGATCTACCCAGGACCTTACTATCA
TGGCTCGCAGTACGGACCCTACAACTACGCAAGCTTTCTAGACCAT
FMO02566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6398-RB | 1972 | CG6398-RB | 493..1363 | 8..878 | 4340 | 99.9 | Plus |
| CG6398-RA | 1860 | CG6398-RA | 493..1363 | 8..878 | 4340 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17840354..17840697 | 264..607 | 1720 | 100 | Plus |
| X | 23542271 | X | 17840761..17840927 | 605..771 | 820 | 99.4 | Plus |
| X | 23542271 | X | 17840157..17840289 | 132..264 | 665 | 100 | Plus |
| X | 23542271 | X | 17831320..17831446 | 8..134 | 635 | 100 | Plus |
| X | 23542271 | X | 17840986..17841096 | 768..878 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:08 has no hits.
FMO02566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:38 Download gff for
FMO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6398-RA | 475..1351 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:03 Download gff for
FMO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6398-RA | 487..1363 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:47 Download gff for
FMO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6398-RA | 487..1363 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:47 Download gff for
FMO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17831314..17831446 | 1..134 | 97 | -> | Plus |
| X | 17840160..17840289 | 135..264 | 100 | -> | Plus |
| X | 17840355..17840695 | 265..605 | 100 | -> | Plus |
| X | 17840762..17840927 | 606..771 | 99 | -> | Plus |
| X | 17840990..17841096 | 772..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:03 Download gff for
FMO02566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17734193..17734322 | 135..264 | 100 | -> | Plus |
| arm_X | 17725347..17725479 | 1..134 | 97 | -> | Plus |
| arm_X | 17734388..17734728 | 265..605 | 100 | -> | Plus |
| arm_X | 17734795..17734960 | 606..771 | 99 | -> | Plus |
| arm_X | 17735023..17735129 | 772..878 | 100 | | Plus |
