FMO02571.5prime Sequence
962 bp (899 high quality bases) assembled on 2008-05-23
> FMO02571.5prime
CAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTAAGCGCAGG
AACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAGCAAAAGTC
CAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACGAAAGGCCA
AACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGACCTCTACC
TCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTGGGCAAGGC
CAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAATCGTTATAG
AGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTAGTGCCGAC
AGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGATCCGTGCG
CGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAAAGCCTCTG
CACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGGCTTCGACT
TCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCGGAATCCGA
TGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCAGAAGGTTG
CAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGGGACGTGGT
CGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGACCCAGAAAA
GCAATGGGAAGTCGAAAAAAATTCTTGATCACGTTGCCACCAAGGAGGGC
GACATGTTTAGATCCGATGGAAGAAGTATGGACCGAAAGATGATTCCTGG
GAGCCGAGTAAGAATCTGGCGTGCGATGCGCTTTTTCGAAAAGTTTATGC
GGAAACAAGCACCCAGGAGAACGTGGACGTTAAGGAGCTTGCGCGATTCG
CCCAGGAAGACCGAGCGCCTCGTTCGATGAATGCTTATCCCAGGACAAAT
TCTTCCAAATCG
FMO02571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8289-RA | 1770 | CG8289-RA | 119..1057 | 9..950 | 4485 | 98.8 | Plus |
| CG8289-RB | 1767 | CG8289-RB | 119..1054 | 9..950 | 4430 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17635342..17635926 | 593..9 | 2925 | 100 | Minus |
| X | 23542271 | X | 17634624..17634980 | 950..591 | 1400 | 97 | Minus |
| 2L | 23513712 | 2L | 9788850..9789047 | 630..829 | 405 | 83.6 | Plus |
| 2L | 23513712 | 2L | 9789791..9789906 | 593..478 | 295 | 83.6 | Minus |
| 2L | 23513712 | 2L | 9789914..9790013 | 349..249 | 275 | 87.1 | Minus |
| 2L | 23513712 | 2L | 9789143..9789206 | 275..338 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:30 has no hits.
FMO02571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:28 Download gff for
FMO02571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 109..1066 | 2..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:13 Download gff for
FMO02571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 111..1068 | 2..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:35 Download gff for
FMO02571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 111..1068 | 2..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:35 Download gff for
FMO02571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17634613..17634977 | 594..962 | 95 | <- | Minus |
| X | 17635342..17635934 | 2..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:13 Download gff for
FMO02571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17528646..17529010 | 594..962 | 95 | <- | Minus |
| arm_X | 17529375..17529967 | 2..593 | 99 | | Minus |
