FMO02573.5prime Sequence
986 bp (487 high quality bases) assembled on 2008-05-23
> FMO02573.5prime
CAATCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATCCGGCGAAC
TACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCAGCGGCGCA
CCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCACCTGAGCC
ACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCGCCGCTGTT
CTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACGTCCACGTC
CTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGCTCTGGCTA
GCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACAGTGGCAAG
ATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCGGTGTACAA
CACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGCCAAAGACG
AGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATTCGGAGGAG
GCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGCAATAATCA
GAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGAGCAGGAGA
AGGCCACGCACTTCAAGAATCTGTATGTGAAGAACCTCAGCGAGGAGTTC
ACCGAGCACCATTTGCGCGAGATGTTCGAGCCCTACGGCCGCATCACCAG
TCACAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTTCGGTTTCG
TCGTCTACAAAACCCACAGTCGGCGCTGGCCGCCGTAATTGGCCTGCACG
GCAACAACTGGCGACAACAAGTTCTTGTACGTGGTAGAGCCCTCAGCAAG
GCCGAGCGGCAGCAGAGATCAATCGCATGCTGGAAGGAGCGTAGGCGGCA
GAAGGCGGGCTAGATATTTCTACTACGCAAGCTTTCATAGACTCTTTCGT
TTGGCGCGCGGAACCCAGGTAAGTGGTCATAATCAT
FMO02573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 3922 | CG4612-RC | 555..1475 | 9..926 | 4275 | 98 | Plus |
| CG4612-RA | 2091 | CG4612-RA | 555..1475 | 9..926 | 4275 | 98 | Plus |
| pAbp-RA | 2433 | CG5119-RA | 477..656 | 357..536 | 210 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24524774..24525472 | 707..9 | 3465 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24524328..24524544 | 918..706 | 655 | 93.1 | Minus |
| 2R | 25286936 | 2R | 18143526..18143705 | 357..536 | 210 | 74.4 | Plus |
Blast to na_te.dros performed 2014-11-28 18:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2067..2131 | 207..273 | 114 | 65.7 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1184..1248 | 207..273 | 114 | 65.7 | Plus |
FMO02573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:42 Download gff for
FMO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 560..1484 | 9..931 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:45 Download gff for
FMO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 555..1479 | 9..931 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:31 Download gff for
FMO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 555..1479 | 9..931 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:31 Download gff for
FMO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24524317..24524542 | 708..931 | 92 | <- | Minus |
| 2R | 24524774..24525472 | 9..707 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:45 Download gff for
FMO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20411840..20412065 | 708..931 | 92 | <- | Minus |
| arm_2R | 20412297..20412995 | 9..707 | 99 | | Minus |
