FMO02574.5prime Sequence
1207 bp (1039 high quality bases) assembled on 2008-05-23
> FMO02574.5prime
CAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACTATAAGGAT
AAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAGGTTCTGCT
GGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGATCATCATCT
GCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGGAGATGTTC
AAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAGATGCTCAA
GAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCTCGGGCTCA
GCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTGTTTTCCAC
ATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCCATCGATAT
GAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGAAATGAAGC
AGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACTGCGACCAG
GATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCGGAGGATCT
TATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGGACGCCATTACGC
CGGATTTGCTAAAGCCGCACCCCAACACATACACCTACTCAAAGCGTCTG
GCGGAGCTTCTGGTGCGCGACCACTACGAGTCCATGCCCGTCATCATCGC
ACGTCCCAGCATCGTGTCGCCGGCTGCCTACGAGCCGTTGCCCGGATGGG
TGGACAACCTGAATGGACCGACTGGCCTGATGATCGGATGCGGCAGGGCG
TGATCCGGTCCGTTCTGGTGAATCAGCAGACAAGGCCGAGGTGATTCCCG
TCGACTACGCTATCACGGGCTGATCGTCATTCCCTACGAGTTCACAAGCA
GGCCAAGCGGCCTACCAATGTGCTCGTTATAATATAACCAATGCGGACCA
CAAGGAAGATGACATGGGCACGTTGTGGAGATGAGCAAACGCATCAACAA
GCAGTTCCCATTTAACGCGGGTCTATGGGTACCCGGACCCTTGCGTTACC
ACAACCAATTAATACCACAACTTACACGTGCTCTGTTTCATTATGCCCGC
TTACTTCTGACTCTGATGCTGAATTAAGTCAAAGCGATCTAGTTGGAAGT
CAGGAAGTATTCCACAGTCTGGGCTTCTTCAAGCTCTTACCCCTTACATG
TTGCCTT
FMO02574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..1255 | 9..1138 | 5180 | 97.8 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..1322 | 9..1138 | 5180 | 97.8 | Plus |
| CG30427-RB | 1806 | CG30427-RB | 179..1322 | 9..1138 | 5180 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24934058..24934483 | 714..289 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 288..9 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24930761..24931162 | 1107..714 | 1320 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:51 has no hits.
FMO02574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:44 Download gff for
FMO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 148..1284 | 2..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:32 Download gff for
FMO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 173..1309 | 2..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:03 Download gff for
FMO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RB | 173..1309 | 2..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:03 Download gff for
FMO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24930737..24931161 | 715..1126 | 94 | <- | Minus |
| 2R | 24934058..24934483 | 289..714 | 100 | <- | Minus |
| 2R | 24934552..24934838 | 1..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:32 Download gff for
FMO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20818260..20818684 | 715..1126 | 94 | <- | Minus |
| arm_2R | 20821581..20822006 | 289..714 | 100 | <- | Minus |
| arm_2R | 20822075..20822361 | 1..288 | 98 | | Minus |
