FMO02575.5prime Sequence
1218 bp (993 high quality bases) assembled on 2008-05-23
> FMO02575.5prime
CAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTAAATATGGG
TGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACACACTCGCCA
GCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGACGCGCGAG
AGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATGAAGAGCAG
GAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCAAAGATGGA
AGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTTTTGGGATT
CCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCCACTGGCTG
TTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCGGCGGTACT
GCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAACACAATTT
TACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTTTCGGATGT
GACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGGCAGTTCGA
CGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGATCATTGGC
AGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGATTTTTGTG
CTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGACAATTGCTA
TCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTACGGACGAT
ACGACCTGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGGAGGACAACT
TCTACGTGCGAGGCGACGGCACATGGTGTACTTCTTCACGGAGGAAGAAC
TGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCAGCTCATTGTG
GACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAATGTTACCGCGT
GTTGATTCAGACAAGTTCATGAAACGCTTGCAAGCTTTCTTAGACCTATT
CGTTTGCGCGCGGACCAGGTAGTTGTTCATAATCATATCATAATCATATC
ATAATCACAACTAGCTAGAAATTCTGTCATGACTATTGCTTGAATTCTCA
CAATAAAAACGCCCGTCGCAACGAGCGTTCTTGACAATTCCGATTGGATT
CTGAAGTCTTTATCGTGATCTTATCCACGGAATCCAGCGAGAGCTCGAAT
CACATATTATGGCCGTGC
FMO02575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| metl-RB | 1240 | CG13929-RB | 164..1133 | 9..975 | 4700 | 99.3 | Plus |
| metl-RA | 1107 | CG13929-RA | 193..1000 | 171..975 | 3890 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1638061..1638855 | 964..172 | 3815 | 99.2 | Minus |
| 3L | 28110227 | 3L | 1638908..1639072 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:24 has no hits.
FMO02575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:46 Download gff for
FMO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13929-RB | 155..1137 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:34 Download gff for
FMO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metl-RB | 159..1141 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:33 Download gff for
FMO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| metl-RB | 159..1141 | 1..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:33 Download gff for
FMO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1638040..1638854 | 173..983 | 98 | <- | Minus |
| 3L | 1638909..1639077 | 1..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:34 Download gff for
FMO02575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1638040..1638854 | 173..983 | 98 | <- | Minus |
| arm_3L | 1638909..1639077 | 1..172 | 97 | | Minus |
