FMO02580.5prime Sequence
1193 bp (1013 high quality bases) assembled on 2008-05-23
> FMO02580.5prime
CAGTCGACATGGCTGGAGCTGCCTTCTGCATTGGTCTCAAGTACGCCGGC
ACTGAGAATCTGGTGGCCTTTGCCACGCTGCGGTCGGTGATAAAGGATTT
CCTTCGCTTCCCCAGCAGGCCGATGGGCGAATGTGCCGGTCGCACCACTG
TGGAGAGCTGCCTGATGGTGCTGCTCATCTCGATCTCGTTGGTGTTCGCC
GGCTCCGGCAACTGCGAAATTCTTCGCATAATTCGGTTTCTCAGGTCGCG
AGTGGGACCACAATATCCGCACATAACCTACGGCTCTCACATGGCCATAC
ACATGTCGCTTGGCCTGCTATTCCTCGGCGCGGGTCGCTTCACCATTTCC
CAGACACCGGAGTCGATTGCTGCACTGGTCTGCGCCTTCTTCCCCAAGTT
TCCCATACACAGCAACGACAATCGATACCATCTGCAAGCGCTGAGACATC
TCTATGTACTGGCTGTGGAACCGCGCCTGTTCCTTCCCCGGGACATTGAC
ACCAATAAGCTGTGCCTGGCCAACATATCCGTGTTGGAGGTGGGTGCCAC
CGAGCTGCGCCGCCTGCCCATCGCTCCCTGCATCCTGCCAGTGCTGAGCA
CCCTGCAGCAGGTGGTGGTGGACGACGAGAACTATTGGCCAGTGTGCTTC
GAGCGATCGCGCAACTGGGATCAGCTGGAAAAGGCGCTGGAGATGAGTGC
ACCGATTGATATTAAGAAGCGAACGGGCTGCCTTTCCCACTTGGAGGACC
CGGACAGGCTGAAGAGCATGCTGGCCCAAACATTGACGATGGAACAGAGC
ATCTGTTGGCAGATCGATATGAACGACCTGCAGCAGTTTGCCAGCGAACG
TATGGTGAAGCAGTTCCTCAGTCGCTGCCTGGACACCAAAGGCACGGATT
TGAGTCCCCCGGAGCTGATGAAGCGGCACCAGTGATGCTGCTATTCTACA
ATGCCGTGGTCAGATCGCATGCATTTCTGCCGGTTTACTACCCTATACGA
TCACGTACCAAGTCATGCGAACAACATCGATGTGTGACGATGAGCTCATC
GATGCCTATTTGGATCCAGCAGAGTTCGAGCATCGCTTCACTCTCGGGTC
TATCAATGATTGCATAGCTCTCTCAGCAGATGAGATCGCACGCGCGATTC
GCTACCGTGCGCGATCTTACGCAAGGCCCTGGATCTCCGGCAT
FMO02580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shtd-RA | 6481 | CG9198-RA | 4723..5813 | 8..1084 | 5055 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15456377..15456945 | 988..424 | 2680 | 99.3 | Minus |
| X | 23542271 | X | 15457009..15457425 | 424..8 | 2085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:11 has no hits.
FMO02580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:52 Download gff for
FMO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9198-RB | 16..1103 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:45 Download gff for
FMO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4717..5804 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:12 Download gff for
FMO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shtd-RA | 4717..5804 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:12 Download gff for
FMO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15456362..15456944 | 425..1001 | 98 | <- | Minus |
| X | 15457009..15457431 | 1..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:45 Download gff for
FMO02580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15350395..15350977 | 425..1001 | 98 | <- | Minus |
| arm_X | 15351042..15351464 | 1..424 | 99 | | Minus |
