FMO02581.5prime Sequence
782 bp (782 high quality bases) assembled on 2008-05-23
> FMO02581.5prime
CAGTCGACATGACGACCAGCATTCCACAAGGCACTCTCTTGGACGTGCTG
AAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTATAAAGACGA
GTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCGCCGCGAAG
AAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAA
GAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCT
GTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACGAAAAGCGC
TTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCTTGGAGAAC
CAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAGAAATACGA
AGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGAGCGTTCCG
AGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTGAGGAGGAG
CTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGGAGAA
GGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGTATTGGATC
ATTCTCTGAAAGAGGCTGAGGCTCGTGCTGAGTTCGCTGAACGCTCCGTT
CAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGATGACCTGCTCAACGT
GCGGGGCAAGAACAAACTGCTGCAGGAGGAAATGGAGGCCACCTTACATG
ACATACAGAACATGGCAAGCTTTCTAGACCAT
FMO02581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1194 | 9..764 | 3780 | 100 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..942 | 153..764 | 3060 | 100 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 9..685 | 2965 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 9..153 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 153..287 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 286..406 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15303639..15303720 | 683..764 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 474..552 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 399..475 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 613..684 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 550..615 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:28 has no hits.
FMO02581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:22 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:53 Download gff for
FMO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:34 Download gff for
FMO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 9..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:34 Download gff for
FMO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 9..152 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 153..286 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 287..404 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 405..475 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 476..551 | 100 | -> | Plus |
| 3R | 15301624..15301686 | 552..614 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 615..684 | 100 | -> | Plus |
| 3R | 15303641..15303723 | 685..768 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:53 Download gff for
FMO02581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11126469..11126544 | 476..551 | 100 | -> | Plus |
| arm_3R | 11127346..11127408 | 552..614 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 615..684 | 100 | -> | Plus |
| arm_3R | 11129363..11129445 | 685..768 | 97 | | Plus |
| arm_3R | 11117104..11117247 | 9..152 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 153..286 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 287..404 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 405..475 | 100 | -> | Plus |
