FMO02587.5prime Sequence
1232 bp (925 high quality bases) assembled on 2008-05-23
> FMO02587.5prime
CAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGCTGCAGGAT
GAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAGGGAATCCT
CGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCAGGACATCG
GCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGCTGTTGTTC
AGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATCCTGTTCCA
CGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGCCGAGATCC
TGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGGGTGTTGTC
CCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTGGATGACCT
GGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTTCGCCAAGT
GGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACCAGTCGATC
CTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGCCAGTCGCA
GCGCATCGTCCCAATTGTGGAGCCCGAGGTTCTGCCCGATGGCGATCACG
ATCTGGACCGCGCCCAGAAGGTCACCGAGACCGTCCTGGCCGCCGTCTAC
AAGGCCCTGAGCGACCACCACGTCTACCTGGAGGGTACTCTGCTGAAGCC
CAACATGGTCACCGCCGGTCAGTCGGCCAAGAAAAACACCCCCGAGGAGA
TCGCCTCTGGCCACCGTGCAGGCTCTGCGCCGCACCGTTTCCCGCCGCCG
TTACTGGCGTGACCTTCCTGTCTGGAGGTCAGTCCGAAGGAGGAGGCACC
GTCAACTGAGTGCCATCAACAACGTTTCCCTTGATCCGCCCATGGGCCTT
CACCTTCTCGTACGGTCTGCCCTGCAAGACTCCCGTCCTGGCGTGCCTGG
GCTAGCAAAAAGGAAAAACATTGCTGCCGGGCAAGAACGAGCTGCTTAAG
GCGCGCCAGGGCAAACGTGATGCTGCTCAAGGCAAGTACGTTGACGCAGC
GCTTGTGTCGGAATCTGAATCCCTGATCTTGGCCAACCCACGCTAACTCA
AAGCCTTCTAAACACTTTCGTCTGGGCGCTCCGCGCCACAGGGTAAATGG
CCTAATCTAATCATTATCATACTCTATATCCACTCTGCTCAGGAAAATCT
CGTGGCCTGAGAAAAGGGCTCGTCGAATATAT
FMO02587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 2102 | CG6058-RM | 278..1352 | 9..1088 | 4795 | 97.1 | Plus |
| Ald-RK | 1472 | CG6058-RK | 249..1323 | 9..1088 | 4795 | 97.1 | Plus |
| Ald-RD | 1483 | CG6058-RD | 260..1334 | 9..1088 | 4795 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26258020 | 807..9 | 3880 | 99.6 | Minus |
| 3R | 32079331 | 3R | 26414213..26414832 | 90..709 | 505 | 72.1 | Plus |
| 3R | 32079331 | 3R | 26256942..26257137 | 1000..802 | 445 | 89.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:43 has no hits.
FMO02587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:01 Download gff for
FMO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6058-RE | 258..1262 | 9..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:29 Download gff for
FMO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 260..1313 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:29 Download gff for
FMO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 260..1313 | 9..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:29 Download gff for
FMO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26256933..26257132 | 807..1010 | 91 | <- | Minus |
| 3R | 26255398..26255431 | 1011..1043 | 91 | <- | Minus |
| 3R | 26257225..26258020 | 9..806 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:29 Download gff for
FMO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22081120..22081153 | 1011..1043 | 91 | <- | Minus |
| arm_3R | 22082655..22082854 | 807..1010 | 91 | <- | Minus |
| arm_3R | 22082947..22083742 | 9..806 | 99 | | Minus |
