FMO02588.5prime Sequence
1184 bp (1031 high quality bases) assembled on 2008-05-23
> FMO02588.5prime
CAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGGGCGGCGCC
GTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATTGGCAACCG
AGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCAAGAGGGGA
TATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACCTGGTACAC
GAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAAAAATACCC
GCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCACGGCGGCCC
TGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGGATCAGCAG
GACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTGCAGTTTGG
CCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGCATATCTTT
TCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCACCGTGATA
AGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAGGGAATGCT
CATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAGCTTCTATC
CCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGAATTCGGTC
AGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGTCTAATCGT
GGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCTGGATGGAA
CGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATATCGGTCTC
TTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACCATGTTCCT
AATCACATTCCAAATTGAATGCCACCGTATTATACCTGGTGCCACTAAGT
ATTAAGCTGCCGCAAGGAGCCCCTACTGCTAGCCACGGTATTGGTGGCCC
TTATGGCCGTTTTAAGGGCGTATCCCAGCCTGGGCGATGTCGCTTTTATC
TGCCTGCCTCGCTGTGAAAAGATGTTGGAAATTCATGACCCATGCCTTGT
GTCTTTACGTCTTCTGTCACTCTATCTATGATGGGAGCATTTGGCATTTG
TGAATCATGACAGAATCGCAATGCAATCATCGGGTCAATATGCATTCACT
TGAGAATTTCCAATATCACCAGATTCGCGTGTCT
FMO02588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-U-RA | 1478 | CG13089-RA | 58..1164 | 9..1106 | 5130 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8515343..8515967 | 139..763 | 3125 | 100 | Plus |
| 2L | 23513712 | 2L | 8516030..8516267 | 764..1002 | 1035 | 98.3 | Plus |
| 2L | 23513712 | 2L | 8515153..8515282 | 9..138 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3472..3534 | 270..206 | 122 | 67.7 | Minus |
FMO02588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:02 Download gff for
FMO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13089-RA | 56..1178 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:07 Download gff for
FMO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-U-RA | 58..1180 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:48 Download gff for
FMO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-U-RA | 58..1180 | 9..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:48 Download gff for
FMO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8515153..8515282 | 9..138 | 100 | -> | Plus |
| 2L | 8515343..8515967 | 139..763 | 100 | -> | Plus |
| 2L | 8516030..8516301 | 764..1032 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:07 Download gff for
FMO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8515153..8515282 | 9..138 | 100 | -> | Plus |
| arm_2L | 8515343..8515967 | 139..763 | 100 | -> | Plus |
| arm_2L | 8516030..8516301 | 764..1032 | 96 | -> | Plus |
