FMO02589.5prime Sequence
1162 bp (937 high quality bases) assembled on 2008-05-23
> FMO02589.5prime
CAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCTGCGCCTGC
AATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGTGGAGGAGG
AGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAGTTCGGGAG
GCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTCACGGATAT
TCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAGGGACATGG
CTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGTCATTCTGC
AGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCGGCATTGTG
TCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGCTACGCCAG
TGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAAGATCATCG
AACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCATTCCGATT
TCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTATCATGCTGC
CAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCACTCCTACG
GCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCTCCTTCGAT
ACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTGGTGCTGCA
GGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGTGGCTGCCA
TCATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGGCTATCATTT
TTGAAAGCCGATCAGGCGCAGGAGCCTTCTTCAAAAGCGGACACGTGGTG
CAGCGGGGAACCCTGAAAGTGATGCGCGTCCAGGAGCAGCAGCAATCCCA
GAGCGCTGGTTGCTCCAAGGAGGCTGAGCTCTGTGGCGTGTCATTTCCGG
TGGCTGAGCTCCGCGAGTGCCGCTTCCGGTGCTGGAGCTCCGCGAGTGCC
GCTTCGTGACTGGAGCAGCGATGTCCACCTCGCTGGCAAGCTTTCTAGAC
ATCGTGCCGCGCGGCCCAGAGTCCCTATCCTATCAATCATATCAATACAA
CATGCTAGAGATCTGGTCATGAACTAATGCTGAATCTCCCAATTAAAAAC
GCCGCGGCGTCA
FMO02589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-RC | 1871 | CG2961-RC | 643..1679 | 9..1029 | 4645 | 97.6 | Plus |
| Ipod-RB | 1593 | CG2961-RB | 365..1401 | 9..1029 | 4645 | 97.6 | Plus |
| Ipod-RA | 1328 | CG2961-RA | 100..1136 | 9..1029 | 4645 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10231318..10232226 | 920..13 | 4355 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:54 has no hits.
FMO02589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:03 Download gff for
FMO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2961-RA | 90..1106 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:36 Download gff for
FMO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 93..1109 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:34 Download gff for
FMO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 93..1109 | 1..1005 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:34 Download gff for
FMO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10231221..10232230 | 8..1005 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:36 Download gff for
FMO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10125254..10126263 | 8..1005 | 97 | | Minus |
