FMO02595.5prime Sequence
1203 bp (1001 high quality bases) assembled on 2008-05-23
> FMO02595.5prime
AAAATACGAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTG
CCCGCAGAGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCAC
GGCGGCCAAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGC
AACCGCAAGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACC
CAGACCATCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGA
AACGTACTCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCC
TAATGATACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTG
GGCAGCCAAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACAC
AGCCTACTCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTG
CTTGCCGCCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCC
GGCTTCACCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCAC
CGAGGAGTTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACA
GTCAGCCGCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAG
CGCGCCCATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTA
CTACAAGCACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCA
ACAGCGTACTGCAGGAGTACGACAAACTGATGAAGGAGAGCCAGAGCAGC
ATGCAGAAGCAGCACAACGAGTTCAACGGCCACGACTTTCTCAACATCCT
GGCAACAGCGCCACAGGCAGCAGCCAGAGCATAGGCGGCATGGCCATGGG
CGATATGCTGCAGATCTGGGCGGTAGCACGGGCTCAGTGCACAGTCAGCT
CCAGCAGATGCTGTACGGCCTGCTCGATGGCCAGATATCGTCAATACCTC
CAAATGACGGGACGAGCGGCAATGCAGCACGGGCGGCAATGAAATGGCAT
GGGGCCACGAATAGCACTTCACGCTCACTTGAACCGCAAGCTTTCTAGAC
ATTCGTTGGGCCGCGGTCAGGTATGTCATAATCATATCTACTAATCATCC
AACTAGCCTAGGAGAATCTGCATGGACATGGGCTGGAATTCCTCCCATTA
AAA
FMO02595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6506-RA | 1309 | CG6506-RA | 80..1150 | 22..1080 | 4995 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17850908..17851715 | 270..1066 | 3475 | 98.5 | Plus |
| X | 23542271 | X | 17850539..17850683 | 22..166 | 725 | 100 | Plus |
| X | 23542271 | X | 17850745..17850855 | 167..277 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:16 has no hits.
FMO02595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:58 Download gff for
FMO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6506-RA | 56..1126 | 22..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:22 Download gff for
FMO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6506-RA | 80..1150 | 22..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:47 Download gff for
FMO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6506-RA | 80..1150 | 22..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:47 Download gff for
FMO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17850541..17850683 | 24..166 | 100 | -> | Plus |
| X | 17850745..17850851 | 167..274 | 98 | -> | Plus |
| X | 17850913..17851730 | 275..1080 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:22 Download gff for
FMO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17744574..17744716 | 24..166 | 100 | -> | Plus |
| arm_X | 17744778..17744884 | 167..274 | 98 | -> | Plus |
| arm_X | 17744946..17745763 | 275..1080 | 98 | | Plus |
