FMO02601.5prime Sequence
1150 bp (942 high quality bases) assembled on 2008-05-23
> FMO02601.5prime
CAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTCAAGTCGAT
AGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATCAAGAAAAT
GGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCTCTTCCTGG
CCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATCAGGTATGC
GCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATCCTCGCTTA
TAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAATGCGAACG
GCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGGCCATGGCC
TCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGGTTGAGTTA
CGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGGCCATGACG
TGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGTTTGGCCGC
CATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGCCAGCGGCA
AAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAACTGGCTCT
TTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCGACTGGACC
GAGCTGACCAGCTGCGTGGGACGTGGAGCTCGACAAGAACGAAGGGGAGA
CGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACCCATTGCT
CGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCCGGAAGGG
ATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCGAGCTGCCCG
CTTGCTACAGGGCAAGGACTGGCTGGACGTGGATCTTGACCAGTTCGCCG
GCTGCAAGTCCAATCTGGCGGCTAACCGCCAAACCGCATGCTGCCGATCT
CGGCCCTCGTCGGCTGCTACACAAGTCTTCGATGCTCGCTTCATGAGCGG
GATCGCGTGAAGCTGGGCCAGCGCAAGCGCAATTCTGGACGGCCTTGGCC
TTACTTTGGACTGAACTGAATAATCAAGAATGTCCAGTTCATTTTCAAAG
GAAAATTTCAACCTGGGGTTTTCCCATTCCTTCAGAACGATCAAACCCCA
FMO02601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs6st-RB | 3100 | CG4451-RB | 590..1709 | 7..1130 | 4980 | 97.1 | Plus |
| Hs6st-RA | 2657 | CG4451-RA | 590..1709 | 7..1130 | 4980 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19937561..19938052 | 1016..526 | 2050 | 97.6 | Minus |
| 3R | 32079331 | 3R | 19938124..19938459 | 527..192 | 1680 | 100 | Minus |
| 3R | 32079331 | 3R | 20006232..20006422 | 197..7 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:00 has no hits.
FMO02601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:25 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:34 Download gff for
FMO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 583..1669 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:32 Download gff for
FMO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs6st-RA | 583..1669 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:32 Download gff for
FMO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20006235..20006427 | 1..194 | 97 | | Minus |
| 3R | 19937474..19938050 | 528..1100 | 94 | <- | Minus |
| 3R | 19938124..19938456 | 195..527 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:34 Download gff for
FMO02601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15763196..15763772 | 528..1100 | 94 | <- | Minus |
| arm_3R | 15763846..15764178 | 195..527 | 100 | <- | Minus |
| arm_3R | 15831957..15832149 | 1..194 | 97 | | Minus |
