FMO02603.5prime Sequence
1259 bp (198 high quality bases) assembled on 2008-05-23
> FMO02603.5prime
TAAAATACGAAGTTATCAATCCACATGTCGTCGCGTTCCAAGGAAAGAGT
ATTCCCTGCATTCCGCAAAATCTTCCACAAGTCCAGCAACAACAATAATA
ATAACGACAACAACCATATTAATAATATAAATAATAATAACAACAATGAC
AAGGTCGATGGCGCCACTGGCAGCAGCCCGAATATAAACAACAATAATAA
TAATAATAATAATAACCACAATCACGATGGAGCACCAGCACCCTCTTCGG
CAGGAGGCGTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCGGGATCATCC
GGTGCCGCAAAAAATGCCGTAGATCGAATGGCAGCCGAGCAAGCTGTGTG
GGATTCACCAGGCAAGCGGCGACAACAAGATCACAAGGTGGCGCCGACAA
CGGAACGCCAACTGGTGGCGGCTCCGGATCATACAATTCGAACCCGTCGC
CTGATGAAAGAATACCGCGAAATGGAGCGACTGCAGGCCAAGAACGATGC
TGTCTTCACGGTGGAACTCGTCAACCATGATCTATTCGAGTGGCACGTAC
GCCTGCACGTGATTGATCCCGACTCGCCGCTGGCCAGAGATATGGACGAG
ATGGGTGTGCCGGCCATACTGTTGCACCTGAGTTTCCCCGACAACTTCCC
CTTTGCCCCGCCCTTTTATGCGCGTGGTGGAGCCGCACATCTAGAAGGGT
TACGTGATGGAGGGTGGCGCCATCTGCATGGAGCTCTTAACCCCACGCGG
ATGGCCCAGAGCCTATACGGTGGAGGCGGTCATCATGCATTTCGCACCCA
GCGTGGTTAAGGGCCTAGGCAGGATCGCGCGCAAGCCAAATAGTTCAAGG
ATTCACTCGGCGCCAGCTTGAGGAGTCGTTCCGTTCGCTGGTGAAGACTA
CGAAAATACTGATGGGTTACGCCCGCCTGGGTCGATGAGCAAGCTTTCTA
GATCATTTTTTTGGAGCGCGGAGCCAGGTAAGTGGTCAGAATCAAAATCA
TAATCAAAATCCTAATCGAACTATCCTAGAGAATCCTTGGGTCTTGATTG
TTGCTTGGAATTCTCACTCATTAAAAAACGTCCGGCGAGACAACGAACGA
TTCTGAGACAAACCGAATGTGATTCTCGAGTCCCTTCACGGCATCCTATT
ACATGGAGTCCACGCGACGCTCTAATTCAATTGCCTCGGCCCCGGTCCCT
TCTCACTGCAATTTCGCGTGTGATATTCATAATTAACAATTCTCTCGCAC
GAACATGCG
FMO02603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4502-RA | 2078 | CG4502-RA | 510..1415 | 25..927 | 4005 | 96.5 | Plus |
| CG4502-RB | 2027 | CG4502-RB | 459..1364 | 25..927 | 4005 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7196312..7196674 | 387..25 | 1695 | 97.8 | Minus |
| 2L | 23513712 | 2L | 7195716..7196053 | 848..510 | 1465 | 96.2 | Minus |
| 2L | 23513712 | 2L | 7196110..7196235 | 512..387 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:51 has no hits.
FMO02603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:10 Download gff for
FMO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4502-RA | 505..1400 | 25..917 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:05 Download gff for
FMO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4502-RB | 459..1354 | 25..917 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:22 Download gff for
FMO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4502-RB | 459..1354 | 25..917 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:22 Download gff for
FMO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7195703..7196052 | 511..859 | 95 | <- | Minus |
| 2L | 7196112..7196235 | 387..510 | 99 | <- | Minus |
| 2L | 7196313..7196674 | 25..386 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:05 Download gff for
FMO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7195703..7196052 | 511..859 | 95 | <- | Minus |
| arm_2L | 7196112..7196235 | 387..510 | 99 | <- | Minus |
| arm_2L | 7196313..7196674 | 25..386 | 97 | | Minus |
