FMO02604.5prime Sequence
506 bp (506 high quality bases) assembled on 2008-05-23
> FMO02604.5prime
AAAATACGAAGTTATCAGTCGACATGCTCAAAGATGATAAGCTGGCGCAG
CATGTGCCCACACTGCATCCAACATCCGAGGAGCTGTCCATCGGCAACAT
GCGCTTCACTACATTCGACTTGGGTGGCCACACTCAGGCACGACGCGTCT
GGAAGGACTACTTCCCTGCTGTGGACGCCATCGTTTTCTTAATAGACGCC
TGGGACCGTGGCCGCTTCCAGGAGAGCAAAAACGAGCTGGATTCGCTGCT
CACGGATGAGGCGCTGTCCAACTGCCCCGTGCTCATATTGGGCAACAAAA
TCGATAAGCCCGGCGCGGCTAGCGAGGATGAGCTGAGAAACGTGTTCGGA
CTGTATCAGCTAACAACCGGCAAGGGCAAAGTTGCACGCGCCGATTTGCC
CGGCCGTCCTCTGGAATTGTTCATGTGCTCCGTGCTGAAGCGACAGGGCT
ACGGCGAGGGTTTCCGTTGGCTGGCGCAGTATATCGATGCAAGCTTTCTA
GACCAT
FMO02604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sar1-RE | 1452 | CG7073-RE | 227..691 | 24..488 | 2325 | 100 | Plus |
| Sar1-RC | 1801 | CG7073-RC | 576..1040 | 24..488 | 2325 | 100 | Plus |
| Sar1-RD | 1552 | CG7073-RD | 327..791 | 24..488 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22359524..22359761 | 138..375 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 22359835..22359950 | 373..488 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 22358563..22358628 | 73..138 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 22358443..22358491 | 24..72 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:03 has no hits.
FMO02604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:12 Download gff for
FMO02604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7073-RE | 337..805 | 24..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:37 Download gff for
FMO02604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sar1-RA | 278..746 | 24..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:34 Download gff for
FMO02604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sar1-RD | 327..795 | 24..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:34 Download gff for
FMO02604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22358443..22358491 | 24..72 | 100 | -> | Plus |
| 3R | 22358563..22358628 | 73..138 | 100 | -> | Plus |
| 3R | 22359525..22359760 | 139..374 | 100 | -> | Plus |
| 3R | 22359837..22359954 | 375..493 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:37 Download gff for
FMO02604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18184165..18184213 | 24..72 | 100 | -> | Plus |
| arm_3R | 18184285..18184350 | 73..138 | 100 | -> | Plus |
| arm_3R | 18185247..18185482 | 139..374 | 100 | -> | Plus |
| arm_3R | 18185559..18185676 | 375..493 | 98 | | Plus |
