FMO02605.5prime Sequence
968 bp (968 high quality bases) assembled on 2008-05-23
> FMO02605.5prime
CAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCGGCATGCAT
CCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATGGCTATAAA
ATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGGCAAGGTTT
CTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCAAAATGCTG
TTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGAAGTTTGGT
GCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGAGGATCTAA
TGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAGGCTGCGGC
TCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGTTGGCACAT
GTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAAGGAGAATG
TAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTCAACCAGAC
AACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAACAGTTGCA
GTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAACTTACCAA
ATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAGCACCCAAT
AATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGTGGCGAGGT
ACAGTTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAAGGAGCGT
GTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTCCAAGAAT
ACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACCACTGAAT
TCCATCAGGGACACACGACTCGGTGGGCGGTGGCCTGGAGCTTCCACTCG
GAGCACTACAGCAGGGACAACAGCAAGCTTTCTAGACCATTCGTTTGGCG
CCGCGGGCCCAGGTAAGT
FMO02605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7544-RB | 1592 | CG7544-RB | 107..1021 | 9..922 | 4505 | 99.7 | Plus |
| CG7544-RA | 1585 | CG7544-RA | 107..1021 | 9..922 | 4505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15148410..15148823 | 341..755 | 2025 | 99.8 | Plus |
| 2R | 25286936 | 2R | 15148149..15148361 | 131..343 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 15148883..15149045 | 755..916 | 765 | 99.4 | Plus |
| 2R | 25286936 | 2R | 15147966..15148089 | 9..132 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:31 has no hits.
FMO02605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:14 Download gff for
FMO02605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7544-RA | 90..1011 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:25 Download gff for
FMO02605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7544-RA | 107..1028 | 9..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:01 Download gff for
FMO02605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7544-RA | 107..1028 | 9..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:01 Download gff for
FMO02605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15147966..15148088 | 9..131 | 100 | -> | Plus |
| 2R | 15148150..15148360 | 132..342 | 100 | -> | Plus |
| 2R | 15148412..15148823 | 343..755 | 99 | -> | Plus |
| 2R | 15148884..15149061 | 756..934 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:25 Download gff for
FMO02605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11035471..11035593 | 9..131 | 100 | -> | Plus |
| arm_2R | 11035655..11035865 | 132..342 | 100 | -> | Plus |
| arm_2R | 11035917..11036328 | 343..755 | 99 | -> | Plus |
| arm_2R | 11036389..11036566 | 756..934 | 95 | -> | Plus |
