FMO02606.5prime Sequence
858 bp (858 high quality bases) assembled on 2008-05-23
> FMO02606.5prime
CAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCATGCATTTTC
TTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGTCGTCTAAT
TCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTATTCGTCAA
ACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGACGCTATAAC
GGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAATATGTTCA
CGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCACGTTGTTG
GACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACGGCGGCGGC
GTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGCCCCAAGGG
ACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACCCGGACCAC
CTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTTTCGGACCA
CCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGTCCTGGGCC
CTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCGTCCCGGAC
CACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGACCACCAGGC
CCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCACCAGGCCC
CACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCGTTACTCGG
ACAAGGAGACACCCGGCTATCTGCCACCAAACCAACGGGCCAAAGGTCCC
GGCTATCACTATGCAAGCTTTCTAGACCATTCGTTTGGGCGCGCGGGCCC
AGTTAGTG
FMO02606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 353..1156 | 9..812 | 4005 | 99.9 | Plus |
CG10625-RA | 2212 | CG10625-RA | 137..940 | 9..812 | 4005 | 99.9 | Plus |
CG10625-RJ | 3171 | CG10625-RJ | 353..1130 | 9..786 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 721..453 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 5541078..5541268 | 391..201 | 955 | 100 | Minus |
3L | 28110227 | 3L | 5544968..5545102 | 166..32 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 5540635..5540780 | 729..593 | 380 | 85.6 | Minus |
3L | 28110227 | 3L | 5540619..5540747 | 697..560 | 370 | 86.2 | Minus |
3L | 28110227 | 3L | 5540494..5540563 | 786..717 | 350 | 100 | Minus |
3L | 28110227 | 3L | 5541332..5541372 | 203..163 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:01 has no hits.
FMO02606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:26 Download gff for
FMO02606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 135..938 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:03 Download gff for
FMO02606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..940 | 9..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:27 Download gff for
FMO02606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..940 | 9..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:27 Download gff for
FMO02606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5544972..5545101 | 33..162 | 100 | <- | Minus |
3L | 5550784..5550807 | 9..32 | 100 | | Minus |
3L | 5540226..5540248 | 790..812 | 100 | <- | Minus |
3L | 5540491..5540559 | 721..789 | 98 | <- | Minus |
3L | 5540620..5540886 | 454..720 | 100 | <- | Minus |
3L | 5540952..5541014 | 391..453 | 100 | <- | Minus |
3L | 5541079..5541267 | 202..390 | 100 | <- | Minus |
3L | 5541334..5541372 | 163..201 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:03 Download gff for
FMO02606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5534179..5534367 | 202..390 | 100 | <- | Minus |
arm_3L | 5534434..5534472 | 163..201 | 100 | <- | Minus |
arm_3L | 5538072..5538201 | 33..162 | 100 | <- | Minus |
arm_3L | 5543884..5543907 | 9..32 | 100 | | Minus |
arm_3L | 5533326..5533348 | 790..812 | 100 | <- | Minus |
arm_3L | 5533591..5533659 | 721..789 | 98 | <- | Minus |
arm_3L | 5533720..5533986 | 454..720 | 100 | <- | Minus |
arm_3L | 5534052..5534114 | 391..453 | 100 | <- | Minus |