Clone FMO02606 Report

Search the DGRC for FMO02606

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:26
Well:6
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10625-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02606.5prime Sequence

858 bp (858 high quality bases) assembled on 2008-05-23

> FMO02606.5prime
CAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCATGCATTTTC
TTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGTCGTCTAAT
TCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTATTCGTCAA
ACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGACGCTATAAC
GGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAATATGTTCA
CGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCACGTTGTTG
GACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACGGCGGCGGC
GTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGCCCCAAGGG
ACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACCCGGACCAC
CTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTTTCGGACCA
CCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGTCCTGGGCC
CTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCGTCCCGGAC
CACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGACCACCAGGC
CCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCACCAGGCCC
CACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCGTTACTCGG
ACAAGGAGACACCCGGCTATCTGCCACCAAACCAACGGGCCAAAGGTCCC
GGCTATCACTATGCAAGCTTTCTAGACCATTCGTTTGGGCGCGCGGGCCC
AGTTAGTG

FMO02606.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 353..1156 9..812 4005 99.9 Plus
CG10625-RA 2212 CG10625-RA 137..940 9..812 4005 99.9 Plus
CG10625-RJ 3171 CG10625-RJ 353..1130 9..786 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 721..453 1345 100 Minus
3L 28110227 3L 5541078..5541268 391..201 955 100 Minus
3L 28110227 3L 5544968..5545102 166..32 660 99.3 Minus
3L 28110227 3L 5540635..5540780 729..593 380 85.6 Minus
3L 28110227 3L 5540619..5540747 697..560 370 86.2 Minus
3L 28110227 3L 5540494..5540563 786..717 350 100 Minus
3L 28110227 3L 5541332..5541372 203..163 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:19:01 has no hits.

FMO02606.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:26 Download gff for FMO02606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 135..938 9..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:03 Download gff for FMO02606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..940 9..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:27 Download gff for FMO02606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..940 9..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:27 Download gff for FMO02606.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5544972..5545101 33..162 100 <- Minus
3L 5550784..5550807 9..32 100   Minus
3L 5540226..5540248 790..812 100 <- Minus
3L 5540491..5540559 721..789 98 <- Minus
3L 5540620..5540886 454..720 100 <- Minus
3L 5540952..5541014 391..453 100 <- Minus
3L 5541079..5541267 202..390 100 <- Minus
3L 5541334..5541372 163..201 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:03 Download gff for FMO02606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5534179..5534367 202..390 100 <- Minus
arm_3L 5534434..5534472 163..201 100 <- Minus
arm_3L 5538072..5538201 33..162 100 <- Minus
arm_3L 5543884..5543907 9..32 100   Minus
arm_3L 5533326..5533348 790..812 100 <- Minus
arm_3L 5533591..5533659 721..789 98 <- Minus
arm_3L 5533720..5533986 454..720 100 <- Minus
arm_3L 5534052..5534114 391..453 100 <- Minus