FMO02608.5prime Sequence
1134 bp (1020 high quality bases) assembled on 2008-05-23
> FMO02608.5prime
ATAATACGAAGTTATCAGTCGACATGATCGCCGTGCTGTTGGACATATTC
TGGATCCCCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCCGCCAT
AAACAAATCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGA
TATTCGAGTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAAACCAA
CACATTCAAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTAGTGGA
CGACGCCGATTCCAAAGAAGGCACCAATGGAGCCACATTGATTACCAGGG
ACGCGGTACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTT
TCCTCCACAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTGGACTA
CGTAAAGTCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTCGCGCT
TCGAGGCGGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCAATAGG
CACTACGAGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTT
CTTCATCCGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATGCTTCG
TTGGTGTAGTGTGGTTAACAGTCTGCACGGCTGCAGTGGGATACTTGAAG
GATGGGCCCTTCAAGCGGGATCTCGTGCACAAGGTGCTCGGCATGTGCTT
CGGCGTTTTGTCCAGCGCTATATCGGCGGTTATCACCTACCACAATGAGG
ATAATCGCCCGTCATCCGGTATTTGTGTTGCCAATCACACCAGTCCCATT
GATGTGCTGGTCCTGATGTGCGACTCGACCTACTCGCTGATTGGCCAACG
CCATGGCGGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCCC
CCCACATTTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGGCC
GAGCGACTGAAGCAGCACGTGTCTGATCCGACACCCACCGATCCTTATCC
TCCCGGAGAACTTGCATCACAAACGTCGTCATGCAGTTCAGGAGCCAGCT
CGAGTGGCGGCGTCATCTACCGGTGCCATTAGTACGATCGAGATCGGCGA
CGCCCTTCTGGAACAAGCGCGAATTACTCGAATG
FMO02608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RB | 1660 | CG3209-RB | 151..1273 | 24..1131 | 5080 | 97.8 | Plus |
| CG3209-RC | 1751 | CG3209-RC | 151..734 | 24..607 | 2920 | 100 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 151..734 | 24..607 | 2920 | 100 | Plus |
| CG3209-RC | 1751 | CG3209-RC | 958..1276 | 828..1131 | 1030 | 91.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24069998..24070244 | 361..607 | 1235 | 100 | Plus |
| 2R | 25286936 | 2R | 24071991..24072224 | 606..839 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 24069737..24069943 | 157..363 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 24072704..24072875 | 839..1008 | 750 | 97.1 | Plus |
| 2R | 25286936 | 2R | 24069200..24069334 | 24..158 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:02 has no hits.
FMO02608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:18 Download gff for
FMO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 286..1415 | 18..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:11 Download gff for
FMO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 146..1275 | 18..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:25 Download gff for
FMO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RB | 146..1275 | 18..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:25 Download gff for
FMO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24071991..24072224 | 606..839 | 100 | -> | Plus |
| 2R | 24072705..24072961 | 840..1081 | 92 | -> | Plus |
| 2R | 24069195..24069334 | 18..158 | 97 | -> | Plus |
| 2R | 24069739..24069942 | 159..362 | 100 | -> | Plus |
| 2R | 24070000..24070242 | 363..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:11 Download gff for
FMO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19956718..19956857 | 18..158 | 97 | -> | Plus |
| arm_2R | 19957262..19957465 | 159..362 | 100 | -> | Plus |
| arm_2R | 19957523..19957765 | 363..605 | 100 | -> | Plus |
| arm_2R | 19959514..19959747 | 606..839 | 100 | -> | Plus |
| arm_2R | 19960228..19960484 | 840..1081 | 92 | -> | Plus |
