FMO02609.5prime Sequence
1229 bp (969 high quality bases) assembled on 2008-05-23
> FMO02609.5prime
CAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCAGCCTGGTC
GAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCCGCTGATGG
CGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAATGGAGTGG
CCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTGCTCCCACG
GGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTGATTTGGCT
GACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGCGGAACTGG
GCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGCTGGTGTCC
TTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTGCTCATCAT
CCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCATTATGCGG
TCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGGTGAAACTG
CTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGCCTGTCGGT
GAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAAGCTGCTGG
CCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCACTGGCGAG
CTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCCCGCAACAT
TGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTGGAACTACT
TAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATCTGCCGCGC
GCCATTTGGATAGCCATGCCCCTGGTCAGAGCATCTATGTTCTGGTCAAC
TTGGCCTATTTTCGCCGTGGTAAACAAGCCGGAGATGCTCATTTCGCTGG
CCGTGGCGGTGACCTTTGGAAACCGAGTGTTCGACCGCTGGCCTTCATGG
TGCCCATTTTCGTGGCGCTAGAACATTTGGTGGCGTAACGGGGTGCTCTT
CCATCGACCCGCCTTTTCGCTACTGGGGCTCAGGAGGGCATTTGCCCAGT
TTTTTCAGACTGTTCACCGTGAACACCGACGCCCATTCCTTCCTTGAATT
CCGTGTTTTTGTCCCTGCTCAGTCTTTCACGGATAACGTGTACGCTGTAT
CACTACCAGTCGGTCCTCTGGTTCTAGGGGCAACGTATATACGGAGAGTG
TGTGTGCTCTTCACGCACATAGAGAGCGC
FMO02609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JhI-21-RC | 2149 | CG12317-RC | 171..1317 | 8..1143 | 5130 | 97.3 | Plus |
| JhI-21-RE | 2182 | CG12317-RE | 204..1350 | 8..1143 | 5130 | 97.3 | Plus |
| JhI-21-RD | 2119 | CG12317-RD | 141..1287 | 8..1143 | 5130 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12053656..12053924 | 788..520 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 12055085..12055297 | 220..8 | 1065 | 100 | Minus |
| 2L | 23513712 | 2L | 12054303..12054498 | 416..221 | 980 | 100 | Minus |
| 2L | 23513712 | 2L | 12052772..12053088 | 1097..788 | 950 | 92.5 | Minus |
| 2L | 23513712 | 2L | 12053982..12054086 | 519..415 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 27110238..27110337 | 807..708 | 200 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:46 has no hits.
FMO02609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:20 Download gff for
FMO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12317-RB | 111..1279 | 1..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:22 Download gff for
FMO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-21-RB | 114..1282 | 1..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:12 Download gff for
FMO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-21-RD | 134..1302 | 1..1156 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:12 Download gff for
FMO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12053982..12054084 | 417..519 | 100 | <- | Minus |
| 2L | 12054303..12054498 | 221..416 | 100 | <- | Minus |
| 2L | 12055085..12055304 | 1..220 | 98 | | Minus |
| 2L | 12052764..12053088 | 788..1103 | 92 | <- | Minus |
| 2L | 12053657..12053924 | 520..787 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:22 Download gff for
FMO02609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12052764..12053088 | 788..1103 | 92 | <- | Minus |
| arm_2L | 12053657..12053924 | 520..787 | 100 | <- | Minus |
| arm_2L | 12053982..12054084 | 417..519 | 100 | <- | Minus |
| arm_2L | 12054303..12054498 | 221..416 | 100 | <- | Minus |
| arm_2L | 12055085..12055304 | 1..220 | 98 | | Minus |
