FMO02611.5prime Sequence
1209 bp (1007 high quality bases) assembled on 2008-05-23
> FMO02611.5prime
CAGTCGACATGGACGCAGTGCAGCACCAAACAAACAGCACTAGCAACATC
GACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTAGGCTTGCT
GATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTTCCACAGCA
AGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGAAGAATCTG
TACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTGAATCTCCA
GGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAGAAACCTCT
TTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCACCACCGCT
CTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCTGTGCAGGA
GCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCTTAGGGCCG
TGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGGTACACAAG
GATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTGCAGGAGCT
GTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAGTTCCAGTT
TCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCCTGGGCTTG
CATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAATGTGGACTA
CAAGGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCAAATGGTT
CTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCAACGGCTT
CTTTGTGGGCATCTCGCCCGAACTGGAACATGGCCCTGTACACCGCCTGC
TTCCTGGCCACGGCGAAAGGAGGAACCCTGCCACATCCAGTTGGGTCATG
CCTCCGCCACGATTGTCTCCACGAATGGAATGGAACGGTATGCGCCTGAT
AGGAACCGTCTATCCGACAGCTCGCAGCTTTCTAGGACATTCGGTTGGCG
CGCGGGTCCAGTAAGTTGTCATATTCATAATCATAATCATATTCATATCA
CACTAGGCTAGAAAATTCTGGTCATGACTGTGGCTTGATTCTACTAAATA
AAAAACGCCGGCGCCACCGACCTTCTGACCAATTCGAATTGGAGTTCTGA
GGTTCTTATCTGGAACTATACACAGGAGATTCAGAGCAACTGAATTATAG
CTCTAGATA
FMO02611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3303-RA | 1645 | CG3303-RA | 196..1160 | 9..973 | 4675 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15909347..15909580 | 501..735 | 1125 | 99.6 | Plus |
| 3R | 32079331 | 3R | 15909085..15909290 | 296..501 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 15909642..15909874 | 734..966 | 975 | 98.3 | Plus |
| 3R | 32079331 | 3R | 15906586..15906746 | 135..295 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 15908778..15908938 | 135..295 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 15906401..15906527 | 9..135 | 620 | 99.2 | Plus |
| 3R | 32079331 | 3R | 15908593..15908719 | 9..135 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:55 has no hits.
FMO02611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:04 Download gff for
FMO02611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3303-RA | 153..1124 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:01 Download gff for
FMO02611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3303-RA | 153..1124 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:25 Download gff for
FMO02611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3303-RA | 189..1160 | 1..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:25 Download gff for
FMO02611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15909644..15909882 | 736..973 | 97 | == | Plus |
| 3R | 15909085..15909290 | 296..501 | 100 | -> | Plus |
| 3R | 15909348..15909580 | 502..735 | 99 | -> | Plus |
| 3R | 15908586..15908719 | 1..135 | 96 | -> | Plus |
| 3R | 15908779..15908938 | 136..295 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:01 Download gff for
FMO02611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11734807..11735012 | 296..501 | 100 | -> | Plus |
| arm_3R | 11734501..11734660 | 136..295 | 100 | -> | Plus |
| arm_3R | 11734308..11734441 | 1..135 | 96 | -> | Plus |
| arm_3R | 11735070..11735302 | 502..735 | 99 | -> | Plus |
| arm_3R | 11735366..11735604 | 736..973 | 97 | == | Plus |
