Clone FMO02612 Report

Search the DGRC for FMO02612

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:26
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptAma-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02612.5prime Sequence

1213 bp (946 high quality bases) assembled on 2008-05-23

> FMO02612.5prime
CAGTCGACATGGCGCGTCTGCGGCTTCTAATCGGTCTTATATTCTGCCTT
GCGATCAGCTTGGATTCGGTGCTTAGTGCCCCAGTGATCAGCCAGATCAG
CAAGGACGTGGTGGCCAGTGTGGGCGACTCTGTGGAGTTCAACTGCACCG
TGGAGGAGGTGGGACAGCTCTCGGTGAGCTGGGCCAAGCGTCCCAGCGAG
TCGGACACCAACTCGGTGGTGCTCTCCATGCGGAATATCCTCAGTCTGCC
CGACCAGCGGTACAACGTAACGGTCACCGAAGGACCCAAGACCGGAAGTG
CCATTTACACCTTCCGCATTCAGAACATCGAAGTCAGTGACATGGGTCCG
TACGAGTGTCAGGTGCTTGTTTCGGCCACGGAGAAGGTGACCAAGAAGCT
GAGCCTGCAGATCAAGACCCCGCCGGTGATTGCGGAGAACACCCCCAAGA
GCACCCTGGTGACAGAGGGACAGAATCTGGAGCTGACCTGCCATGCCAAT
GGCTTTCCCAAGCCTACGATCTCCTGGGCCCGCGAGCATAATGCAGTGAT
GCCTGCCGGTGGCCATTTGCTGGCCGAACCAACTCTCCGGATTCGTTCCG
TGCACCGGATGGATCGCGGCGGCTACTACTGCATCGCGCAGAACGGAGAG
GGCCAGCCGGACAAGAGGTTGATCCGGGTCGAAGTGGAGTTCCGTCCGCA
GATTGCCGTCCAGAGGCCCAAGATCGCCCAAATGGTGTCCCATTTCCGCG
GAGCTGGAGTGCTCCGTGCAGGGCTACCCGGCTCCGACTGTAGTTTGGCA
CAAGAATGGCGTGCCCCTGCAGTCTAGCCGGCACCACGAGGTGGCCAACA
CCGCCTTCTTCTCGGGAACACATCTCTGTGCTGCGCATCGATAGCGTGGG
GCGAGGAGGACTTTGGGGACTACTACTGCATGGCCACAATAAGCTGGGAC
CGCCGGATGGCTCGATCTGCATCTCTTTCAGAACGGTCATCCCCGTGGCC
CTCTTGATCGGCAGCTTTTAGGACAATTTCGTTGGCCGGCCGGGGCCCAG
GTAGTGTGTCTAATTCATAATATAACTAATCTATAATCACACTAGGCCTA
GGAAATTCTGGTCAGGACTATGGTGCGTTGGATTCTCCCAATAAAAGGCC
CGGGCGCACTCGAGGCGGCTTCGGAACACAAATTACTCGAGTAGTGGATC
TCTGCGATGGGGG

FMO02612.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ama-RC 1526 CG2198-RC 102..1096 6..1003 4600 98 Plus
Ama-RA 1542 CG2198-RA 118..1112 6..1003 4600 98 Plus
Ama-RB 1833 CG2198-RB 409..1403 6..1003 4600 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6763837..6764782 6..950 4420 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 19:22:05 has no hits.

FMO02612.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:05 Download gff for FMO02612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2198-RC 98..1059 1..965 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:46 Download gff for FMO02612.5prime
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 407..1368 1..965 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:09 Download gff for FMO02612.5prime
Subject Subject Range Query Range Percent Splice Strand
Ama-RB 407..1368 1..965 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:09 Download gff for FMO02612.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6763830..6764796 1..965 98 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:46 Download gff for FMO02612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2589552..2590518 1..965 98 == Plus