FMO02614.5prime Sequence
1209 bp (1040 high quality bases) assembled on 2008-05-23
> FMO02614.5prime
CAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCATACTGGCT
GAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTACGGTGAACT
AGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCGCGGTCGAC
GACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTGGCGTCAAG
CGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAGGCCATTCT
GGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAACCAGGCGG
TAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTCAGGTGGGA
CGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACGCTGCCAGG
CGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCGGTTCGCCT
GCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAATATTCGCT
GCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAGGCCACCAA
GTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGGTGTGCTGA
TTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGTGCGGACTA
TGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGCGAATCGCG
TTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAACATTCTGC
AGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTTGGCGTTCCG
CCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAGAACTTATCG
ATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCTGAACACGCTG
GGTTATACCACGCAAAGTTACATTGGGGATCAGGTGAACCAGCCTTACGT
GTACTAAACTGTGGCATGTCCAGGGCATCACGATGGGGTCAGATGAGAAC
ACTGCGCCCCGCCGCTGTCGATGTGCCTGGACCTCGGTCCGGTGGTCACC
CTGTGCATGGGACTGAACAGCTTCTATGTGGGACGTGGGCGCCCCGACGT
ACGCGTTCAATCATGCGACCATGGGCACTGAAACCGCAATCTGGGCCAAG
TGTGTGGAATCCTCAAGGATCCACGGAATCGGGCGCGCTGCGTCCCTCTC
GGTGCGAAG
FMO02614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pli-RB | 2903 | CG5212-RB | 412..1549 | 9..1133 | 5155 | 97.9 | Plus |
| Pli-RA | 1844 | CG5212-RA | 484..1621 | 9..1133 | 5155 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23862976..23863215 | 351..112 | 1185 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23862449..23862644 | 537..342 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 23862194..23862383 | 725..536 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 23861814..23861969 | 975..823 | 535 | 96.8 | Minus |
| 3R | 32079331 | 3R | 23865563..23865656 | 112..19 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 23862031..23862130 | 823..725 | 450 | 99 | Minus |
| 3R | 32079331 | 3R | 23861611..23861734 | 1112..992 | 305 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:56 has no hits.
FMO02614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:26 Download gff for
FMO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5212-RB | 383..1527 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:07 Download gff for
FMO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pli-RA | 477..1621 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:17 Download gff for
FMO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pli-RA | 477..1621 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:17 Download gff for
FMO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23862450..23862641 | 345..536 | 100 | <- | Minus |
| 3R | 23862983..23863214 | 113..344 | 100 | <- | Minus |
| 3R | 23865563..23865660 | 13..112 | 97 | | Minus |
| 3R | 23861815..23861968 | 824..974 | 96 | <- | Minus |
| 3R | 23862031..23862129 | 726..823 | 98 | <- | Minus |
| 3R | 23862194..23862382 | 537..725 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:07 Download gff for
FMO02614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19687537..19687690 | 824..974 | 96 | <- | Minus |
| arm_3R | 19687753..19687851 | 726..823 | 98 | <- | Minus |
| arm_3R | 19687916..19688104 | 537..725 | 100 | <- | Minus |
| arm_3R | 19688172..19688363 | 345..536 | 100 | <- | Minus |
| arm_3R | 19688705..19688936 | 113..344 | 100 | <- | Minus |
| arm_3R | 19691285..19691382 | 13..112 | 97 | | Minus |
