FMO02616.5prime Sequence
1220 bp (1047 high quality bases) assembled on 2008-05-23
> FMO02616.5prime
CAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGTCGACAACG
GCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGAGCAGCGGG
TGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCTCAGCGAGT
TTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTGATAACTAC
ATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATACCCAAGCA
GCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGTAAAGATAG
TCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCACGGAATGCC
TTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGGAGCGTCCA
GTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAATGATGGAGG
AGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCCTACAGAAC
ATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTGGCCACCAT
TGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCACAAGCCGG
ACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGGCGAACCTG
CGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAGATCCTGCC
TTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGAAGCGGACG
TGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCTACTACGGG
GTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTACATGACGCA
GAACCTAAAGCATCTCATCAGAGCGCATCACTGAGCGGCGCATGCCGGAA
ATACGTGGCCTTGCGTCCGGACAGACGCTGCCCAGTGTTCAGCGCATCTT
TCAGTTCTACGCCTCGATGACTCACGGCGTTACTCTGCGAGCGATCTGCC
GAGATGGTGCCCCAGCACCACAACATCGATGAGCGTCGCATGTGATCTCG
GCTGCAGCACCGATTCATTCCCTGCATCCCCAAATACCGGGTGTTTACGG
GCTCATGCCTTCGGCGGCGAGAAGTAACCCGGCTGAACCGCTGACAGATC
CGGCTGCGAAAGGCACTCTCGCCCTGCCACATCGAAGCGAGATTCTCGAA
AGAGAACGCAAAGGTGTGAA
FMO02616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9104-RA | 1707 | CG9104-RA | 125..1318 | 8..1185 | 5305 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16883495..16884004 | 692..183 | 2550 | 100 | Minus |
| X | 23542271 | X | 16882987..16883408 | 1105..691 | 1705 | 96.9 | Minus |
| X | 23542271 | X | 16884062..16884241 | 187..8 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:07 has no hits.
FMO02616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:29 Download gff for
FMO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9104-RA | 79..1189 | 1..1105 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:06 Download gff for
FMO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9104-RA | 119..1229 | 1..1105 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:31 Download gff for
FMO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9104-RA | 119..1229 | 1..1105 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:31 Download gff for
FMO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16882987..16883406 | 693..1105 | 97 | <- | Minus |
| X | 16883495..16884001 | 186..692 | 100 | <- | Minus |
| X | 16884064..16884244 | 1..185 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:06 Download gff for
FMO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16777020..16777439 | 693..1105 | 97 | <- | Minus |
| arm_X | 16777528..16778034 | 186..692 | 100 | <- | Minus |
| arm_X | 16778097..16778277 | 1..185 | 97 | | Minus |
