FMO02617.5prime Sequence
1228 bp (1013 high quality bases) assembled on 2008-05-23
> FMO02617.5prime
CAGTCGACATGCCCAAAATCCATGTGAAGAAGCCGCTGGCGGGACTGGTC
ATACGGAATCGAGCCCACAAGAGCAAGAGTGTCTTCACGAGTTCCGGAAT
CGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTCTAGAGTTCT
TCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTCAACCAGACG
TTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGGCATCAAGGG
GATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTTCGGACATCT
GGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACCTGCCTGCCC
ATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCATGATCTCAAT
AAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCTACGTGGCGG
ACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTGGCCTCGGCC
ACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAATGCCCTGAT
GGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGGCCATTGCGC
TGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGTCTATCAGAG
AAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGAGCAGGCGGA
TCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCGTGCTGATGC
TGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGGGAGTATTCC
TGCATGTTTGTCTATCTGAAACTGAAGATGGGCTTTAACTATGTGGAGGT
CTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCATCACGGTGCAAGTCA
CACTCGGCTCCTTCATGCAAGTGTATGGAGCCAGCGCACGATTATAATGG
GCCTAGCCCTGAAATCGTGCAGCTGCTGTGTACGCTTTGTCAGTTCAAAG
TGGATGATGTGTCGCTGCGTGTGGCTGCCCTGGCTCCAATCACGTATCCC
GCCATCAATGCTTTTGATTCCCTTATGCGCTCCCGAAGTCAGGGCCTTTC
AAGCATTGAATCACGTCATGAGGTCTGTCATATGCCTGTTCCTGCGACTT
CCGGTCTCTCTCACCGTTGAACGTCCATCTGAACAGCAACCCCATTCTCC
GAGTGTCAAGAGAACAGCGTAGCTACTA
FMO02617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RC | 2510 | CG11537-RC | 550..1647 | 9..1095 | 5065 | 98.2 | Plus |
| CG11537-RG | 3348 | CG11537-RG | 1468..2485 | 89..1095 | 4665 | 98 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 1168..2185 | 89..1095 | 4665 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3130511..3131037 | 711..185 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3130239..3130448 | 919..710 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 3131109..3131205 | 185..89 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 3142828..3142908 | 89..9 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 3130116..3130178 | 980..920 | 200 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:14 has no hits.
FMO02617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:28 Download gff for
FMO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 539..1652 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:08 Download gff for
FMO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 542..1655 | 1..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:35 Download gff for
FMO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RC | 542..1655 | 1..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:35 Download gff for
FMO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3142828..3142915 | 1..89 | 95 | | Minus |
| 3L | 3130239..3130447 | 711..919 | 100 | <- | Minus |
| 3L | 3130512..3131036 | 186..710 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 90..185 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:08 Download gff for
FMO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3130239..3130447 | 711..919 | 100 | <- | Minus |
| arm_3L | 3130512..3131036 | 186..710 | 100 | <- | Minus |
| arm_3L | 3131109..3131204 | 90..185 | 100 | <- | Minus |
| arm_3L | 3142828..3142915 | 1..89 | 95 | | Minus |
