FMO02620.5prime Sequence
791 bp (791 high quality bases) assembled on 2008-05-23
> FMO02620.5prime
CAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGGGCAACCTT
CCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCACAAGTTCGG
CAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCCATTTGCTT
TTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGAAGGCGCGC
GACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTCCCGCGGGG
CGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCGAAGCCGCG
ACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGCGCTCGCAG
TACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGGCAAGATCT
CAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGACACTTACA
AGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACATGAAGTAC
GCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAGGGCGAGGT
TGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAGAGGCGGTG
GTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAGGTGGAAGC
CGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCGAGGCCGCG
CCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATCTTATTCCA
GGTCTCGCTCACGTTCTAACTATGCAAGCTTTCTAGACCAT
FMO02620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SF2-RB | 2576 | CG6987-RB | 98..862 | 9..773 | 3825 | 100 | Plus |
| SF2-RA | 1392 | CG6987-RA | 98..862 | 9..773 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16341228..16341599 | 543..172 | 1860 | 100 | Minus |
| 3R | 32079331 | 3R | 16341727..16341891 | 173..9 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 16340822..16340948 | 667..541 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 16340657..16340766 | 773..664 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:21 has no hits.
FMO02620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:35 Download gff for
FMO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6987-RA | 89..861 | 2..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:09 Download gff for
FMO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF2-RA | 93..865 | 2..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:39 Download gff for
FMO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF2-RA | 93..865 | 2..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:39 Download gff for
FMO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16340653..16340762 | 668..777 | 98 | <- | Minus |
| 3R | 16340822..16340946 | 543..667 | 100 | <- | Minus |
| 3R | 16341229..16341598 | 173..542 | 100 | <- | Minus |
| 3R | 16341728..16341896 | 2..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:09 Download gff for
FMO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12166375..12166484 | 668..777 | 98 | <- | Minus |
| arm_3R | 12166544..12166668 | 543..667 | 100 | <- | Minus |
| arm_3R | 12166951..12167320 | 173..542 | 100 | <- | Minus |
| arm_3R | 12167450..12167618 | 2..172 | 97 | | Minus |
