FMO02621.5prime Sequence
1218 bp (1012 high quality bases) assembled on 2008-05-23
> FMO02621.5prime
CAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGACCGATAAT
AAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGAAACTCGCC
GCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGAACTCCGTA
TCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGTTCCTGCTC
AGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTATCTGCAGGA
GCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTTCCTCACGC
TCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGCGGCGGCTG
GAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAGCCGGAGCC
ACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCTCACGCTGG
GTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACTATCCCACC
CAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTGGGCAGCAT
CCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGCAGCCACCT
GCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCCAGATGACG
CCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCGCTGCTCTG
CGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGAATTCAAGG
CGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTTTTGTGTAC
CTATTTGTGATTATGCTGGTTACCGGCACTTCTTCAACGGCTTTGCATTC
TGTTTGGAGCATCCCGTTGAGACCTTCGGCTATGGCTTCCTCTTTTAGTT
GTCCGGCTATCTGGGCATTCAGTTTGTGCTGGCTCTGGTGAGGAGTAGTG
TGCCCCATAGCTGCCACGTGACACGCCCGCAGGCTGTGACTATAGCTTCT
CCTTTGTGCTTTTCAGCAGTCCTTTACCTTACAATATCTGTGTCGGCCTC
ATCGTGTTCATGGACATAATTCTTCATGTCTACAGCAAAGACAGCTGACG
TGGCGCGTCGCAGAATAAGCATTGAGCAGGTTCCGTTCCGAATTCAATCC
ATCGAATTGGCAGCATCTGAACATCGTTGAGGACGAGCACGCGCGCTGCG
AGCGCGTCCCCGAGTAAT
FMO02621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papst2-RA | 1551 | CG7853-RA | 270..1360 | 9..1088 | 4985 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17043066..17043917 | 9..859 | 4195 | 99.8 | Plus |
| 3L | 28110227 | 3L | 17043972..17044155 | 858..1033 | 485 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:12 has no hits.
FMO02621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:37 Download gff for
FMO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7853-RA | 259..1372 | 3..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:18 Download gff for
FMO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papst2-RA | 264..1377 | 3..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:31 Download gff for
FMO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papst2-RA | 264..1377 | 3..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:31 Download gff for
FMO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17043060..17043917 | 3..859 | 99 | -> | Plus |
| 3L | 17043974..17044155 | 860..1033 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:18 Download gff for
FMO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17036160..17037017 | 3..859 | 99 | -> | Plus |
| arm_3L | 17037074..17037255 | 860..1033 | 93 | -> | Plus |
