FMO02622.5prime Sequence
1211 bp (1038 high quality bases) assembled on 2008-05-23
> FMO02622.5prime
CAGTCGACATGGGCGTTAAGAAGCATATCAGCGAGACTCCATTAAGCAAA
TCGAATTCGGTGGATTTATACAGGCCGCCAGCGTTGAGGAACAATAGCAA
TAACAACAACAGCAGCAGCGAGGAAGCAGCTGCAGTAAACGAAGCTATAA
CAACACCATTAGCTGCAGGAACAGCAACCACTGCATCTACAAGTCCTACC
TCCAAAGAATCCCCAAACAGAGAGGCGGACGCCTCAGCAGCAGCAGCGGC
GGCGGCGACACGACGTGAACGCCGTCCCGATCGAGCGGTTTATGTGCCAA
GGGCACGACGCAGTCAAACTACACCACCGACTACTACAACAACAACAACG
GCGGCGGCAGCGACAGCGGTTGCAACAACATCACCACCAGCAGCAGCAGC
GGTGGTCGCAGCAACAATTACAACAGCGCCGGATTCCCCGCCAGTTGCAG
ATACACAGCCGAGCAAAGCGGACGACGTCAACGGTCAGCCGCCGTCCAAG
TCGAAGAAAAGCAAATCGCATCGGGAGCGCAGAGAACGCGCAAAGAAAAC
GACAACAGCTACAACGGCCGATAACGCCACTGTACTGGTTATATCAGCAT
CTGAGAACGATACTCAATCCAACGAAGAACACCGACCGGCAAAGCCAGCG
GACTGTGATAAGGAGATCATGAGCGGCGCCCAGCGTACAAAGCCAGGCAA
TGGCAACAAATCAGCCAGCAATGGCAAAAGCCAGGCATCGCCTCCGCTGC
GCATCGAGGATGTGGTGGCGGCCAGGAGCACCAATGGCGAGGAGCCGGCC
AAATGTGATAACGATGTGCGCGAGCTGCAGCGAGCCTCAAAGGAAATCAA
TCGCAGCAATCGGCGCATCATGAAACAAACCTTCAACTCAGATGTGCTGG
AGATTCCCGAGAAAATAGAGACATCGGCAACAAAGGCCATCCCCACATCC
CGCAGCATCAGCCACAGCGAAACCACCTGTAGACAGCACCACGAAAACGA
TGACGAGGAGACGAGGACGACTGGTGAGATGTTCGACGAGAGCGGCGACT
GTCTGATCCAAGTACTCAAGAACTGACTGAATCGTGGCGAGGGCAAAATA
GACTGCCAATGACTATAACGTTCTTTCAATAAACACACACTGCCTCACGA
AAGATTTCCCGAGCACACGTTCTGGAGGGTTCCAATTCCCAGTGGAGATT
CAACATTCTCG
FMO02622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 2580 | CG2162-RE | 480..1690 | 9..1203 | 5210 | 96.6 | Plus |
| CG2162-RA | 2580 | CG2162-RA | 480..1690 | 9..1203 | 5210 | 96.6 | Plus |
| CG2162-RF | 1669 | CG2162-RF | 1..779 | 441..1203 | 3050 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038121..3038567 | 219..665 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 3038727..3038906 | 664..843 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 3037784..3037961 | 43..220 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 3038962..3039182 | 841..1055 | 800 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 22:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 64..430 | 288 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2665 | 90..383 | 286 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2666 | 45..423 | 274 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6862 | 317..456 | 243 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6955 | 337..570 | 224 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2539 | 79..395 | 214 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2484 | 317..489 | 213 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2535 | 317..427 | 213 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6685..6878 | 64..253 | 212 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7089 | 90..401 | 212 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6689..6870 | 267..449 | 210 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2898 | 122..427 | 208 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7046 | 317..585 | 200 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 355..565 | 195 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2550 | 216..466 | 191 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7056 | 317..529 | 191 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7057 | 149..484 | 189 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2971 | 91..260 | 188 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 343..427 | 182 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2639 | 317..570 | 178 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6952 | 144..399 | 176 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6911 | 87..178 | 175 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2894 | 84..201 | 173 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2421 | 317..400 | 168 | 66.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2108 | 330..427 | 166 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 323..400 | 156 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1585 | 315..416 | 154 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3346 | 333..437 | 144 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2377 | 125..191 | 137 | 67.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11057..11126 | 351..416 | 134 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2898..3012 | 322..441 | 129 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3344 | 317..369 | 121 | 69.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2052..2116 | 335..399 | 118 | 64.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6033..6093 | 340..400 | 115 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6447..6591 | 84..222 | 114 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 372..455 | 114 | 59.5 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 819..865 | 87..135 | 114 | 73.5 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 554..629 | 317..392 | 110 | 60.5 | Plus |
FMO02622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:21 Download gff for
FMO02622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 471..1562 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:17 Download gff for
FMO02622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 402..1493 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:41 Download gff for
FMO02622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 473..1564 | 1..1083 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:41 Download gff for
FMO02622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3037784..3037961 | 43..220 | 100 | -> | Plus |
| 3L | 3038123..3038567 | 221..665 | 100 | -> | Plus |
| 3L | 3038729..3038905 | 666..842 | 100 | -> | Plus |
| 3L | 3038964..3039241 | 843..1107 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:17 Download gff for
FMO02622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3037784..3037961 | 43..220 | 100 | -> | Plus |
| arm_3L | 3038123..3038567 | 221..665 | 100 | -> | Plus |
| arm_3L | 3038729..3038905 | 666..842 | 100 | -> | Plus |
| arm_3L | 3038964..3039241 | 843..1107 | 93 | == | Plus |
