FMO02623.5prime Sequence
1179 bp (994 high quality bases) assembled on 2008-05-23
> FMO02623.5prime
CAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAACCCAGCAT
GGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCACCGCCATAT
GCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCGGGAAGATT
CCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTCCAGCTGAA
AGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAAACGCAATC
AAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGATGACGAAG
GGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAACGAAGCGT
CCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTATTTTGAGAA
TGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCACGTTCGCCA
AAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCCGCGAATTT
CGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCGGGAAAATT
GACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAAGCACAATG
ATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTACTTCACAG
CCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTGAATAAGCC
GGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAACACGGTAG
TTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAACCATTCAC
AGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGGACTGCTGA
AAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAAGTGCAAAAGAA
TACGTTTGCCGCGTTGAAGACGCTTTCAGATGCATAGTTGAATGCAATGA
GAAAATCGACGTCGTGAGCTACAAATAGTGTTTGTAGTTTCACCGGACGC
AGACTGTAGACCACATTAAAAGAATCGGCCAGGTGGCATGATAGTATGTT
TTGTGCAAACACTAAAGACGATGCACCAATACGATGCATTACAATCTGGC
CATCATCCAAATGATCTTGACAACCTGAGTTTCGTCATTGAAGGAAAGGA
GGGAAATTCGGGGAATTACCGAGGAAACA
FMO02623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RluA-2-RC | 2001 | CG6187-RC | 314..1424 | 9..1095 | 4930 | 97.6 | Plus |
| RluA-2-RD | 1880 | CG6187-RD | 181..1291 | 9..1095 | 4930 | 97.6 | Plus |
| RluA-2-RA | 2013 | CG6187-RA | 314..1424 | 9..1095 | 4930 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10481347..10481570 | 402..625 | 1120 | 100 | Plus |
| 2L | 23513712 | 2L | 10477386..10477592 | 9..215 | 1035 | 100 | Plus |
| 2L | 23513712 | 2L | 10481097..10481286 | 215..404 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 10481762..10481970 | 713..919 | 945 | 99 | Plus |
| 2L | 23513712 | 2L | 10481619..10481712 | 623..716 | 470 | 100 | Plus |
| 2L | 23513712 | 2L | 10464997..10465099 | 811..709 | 230 | 81.6 | Minus |
| 2L | 23513712 | 2L | 10482045..10482088 | 932..975 | 220 | 100 | Plus |
| 2L | 23513712 | 2L | 10465286..10465378 | 716..624 | 210 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:06 has no hits.
FMO02623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:22 Download gff for
FMO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6187-RA | 264..1370 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:40 Download gff for
FMO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-2-RA | 305..1411 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:36 Download gff for
FMO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-2-RA | 305..1411 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:36 Download gff for
FMO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10481763..10481983 | 714..930 | 98 | -> | Plus |
| 2L | 10477377..10477592 | 1..215 | 98 | -> | Plus |
| 2L | 10481098..10481284 | 216..402 | 100 | -> | Plus |
| 2L | 10481348..10481570 | 403..625 | 100 | -> | Plus |
| 2L | 10481622..10481709 | 626..713 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:40 Download gff for
FMO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10477377..10477592 | 1..215 | 98 | -> | Plus |
| arm_2L | 10481098..10481284 | 216..402 | 100 | -> | Plus |
| arm_2L | 10481348..10481570 | 403..625 | 100 | -> | Plus |
| arm_2L | 10481622..10481709 | 626..713 | 100 | -> | Plus |
| arm_2L | 10481763..10481983 | 714..930 | 98 | -> | Plus |
