Clone FMO02624 Report

Search the DGRC for FMO02624

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:26
Well:24
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1969-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02624.5prime Sequence

683 bp (683 high quality bases) assembled on 2008-05-23

> FMO02624.5prime
CAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACGATCCTAAT
CTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTTAAGCCCTT
CATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCGTCCTCTCA
AGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGCAACTCACC
CATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTTTCGCAGAT
GAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACACTCGCAAGA
ATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGTTCATCCAT
AACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAATGACACGTA
TCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATCGCTGCTGG
CCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGGACAAGCTG
ATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGAAACTCCAA
CTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCGGAATGCTA
CCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAACTGTGAGC
CTCGATTTTGCCTCTGCAAGCTTTCTAGACCAT

FMO02624.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..711 9..665 3285 100 Plus
CG1969-RF 1341 CG1969-RF 137..779 23..665 3215 100 Plus
CG1969-RH 1261 CG1969-RH 57..699 23..665 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741390 425..665 1205 100 Plus
3R 32079331 3R 29740567..29740778 23..234 1060 100 Plus
3R 32079331 3R 29740840..29740967 235..362 640 100 Plus
3R 32079331 3R 29741028..29741091 362..425 320 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:24:48 has no hits.

FMO02624.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:24 Download gff for FMO02624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 26..700 1..673 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:41 Download gff for FMO02624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 45..719 1..673 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:57 Download gff for FMO02624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 45..719 1..673 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:57 Download gff for FMO02624.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29740568..29740778 24..234 100 -> Plus
3R 29740840..29740967 235..362 100 -> Plus
3R 29741029..29741090 363..424 100 -> Plus
3R 29741150..29741398 425..673 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:41 Download gff for FMO02624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566290..25566500 24..234 100 -> Plus
arm_3R 25566562..25566689 235..362 100 -> Plus
arm_3R 25566751..25566812 363..424 100 -> Plus
arm_3R 25566872..25567120 425..673 98   Plus