FMO02627.5prime Sequence
1208 bp (1023 high quality bases) assembled on 2008-05-23
> FMO02627.5prime
CAGTCGACATGTCGCTAGCCGATGAGCTTTTAGCCGATCTCGAGGAAGAC
AATGACAATGAGCTGGAGGAGGAGGATTCGGAGATGGCCAGTGCAGAGGA
CGAGAGCTTGCTGGCGGAGAAGCTGGCTAAGCCGGCTCCCAATCTGATGG
ACGTGGATGTAACCGTGCAGTCGGTGCGGGAACTGTGCAAGCTGCGCGAC
TCTGAGCGCCTGAAGAACACGCTGCAGCAGATCGAGCACTATGCCAGTCG
CCAGAGAACTGCAGCCGAAATGCTGGGATCCGTAGAATCCGATCCAGAGT
ACTGCCTCATCGTGGACGCTAATGCCATAGCTGTGGACATTGACAACGAG
ATCTCCATTGTGCACAAGTTCACCAAGGAGAAGTATCAGAAGCGATTCCC
CGAATTGGACTCCCTGATCGTGGGTGAAATCGAGTACTTGCTGGCGGTCA
AGGAGCTGGGCAACGACCTGGACCAGGTCAAAAATAACGAGAAGCTGCAG
GCTATTCTCACGCAGGCCACCATTATGATTGTGTCAGTCACGGCGTCCAC
CACACAGGGAACCATGCTGACACCGGCGGAGAAGGCAAAGATCGACGAGG
CCTGCGAAATGGCCATCGAACTGAATAACTTCAAGTCCAAGATCTACGAG
TATGTGGAAAGTCGCATGACCTTCATAGCCCCAAATCTTTCCATGATTGT
TGGAGCATCGACGGCGGCTAAACTCTTGGGCATTGCTGGTGGCCTTTCCA
AATTATCCAAAATGCCGGCCTGCAATGTTCAGGTGTTGGGTGCACAAAGA
AAACCTCTCTCGGGCTTCTCACAAACGCAGATGTTGCCGCACACTGGGCT
ATGTGTACTACTCACAGATTGTGCAGGATACTGCGCCAAATCTGCGACGC
AAGCAGCTCGCTTGGTGGCCGCCAAGTCCGTGCTGGCTGCTCGTGTGGAT
GCCTGTCATGAAAGTGTCCACGGGAGATTGACTGCGCTTCAAGGAGATGT
GAAAAGAAGCTGGACAAGCTGCAGGAGCCGCCGCGGTGAAGTTCATAAGC
CGCTGCCAAACCCAATCGAAGGAGCAGAAAAAGCGAGGAAGCAAACCGCG
TGCCAGAAGTAGGAACGATAATGCGCTTGAACCAGTCGCAAGCAAGCGAA
CGCATGAATTCGGAAAACACTCAAAGAAGATCCTACTCCCAGGAAAATAC
TGTGAGTC
FMO02627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp31-RA | 1862 | CG6876-RA | 71..1232 | 9..1160 | 5135 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15159325..15159776 | 108..559 | 2260 | 100 | Plus |
| 3L | 28110227 | 3L | 15159838..15160358 | 559..1073 | 2045 | 96.4 | Plus |
| 3L | 28110227 | 3L | 15159170..15159268 | 9..107 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:49 has no hits.
FMO02627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:44 Download gff for
FMO02627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6876-RA | 80..1132 | 1..1048 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:23 Download gff for
FMO02627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp31-RA | 63..1115 | 1..1048 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:58 Download gff for
FMO02627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp31-RA | 63..1115 | 1..1048 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:58 Download gff for
FMO02627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15159162..15159268 | 1..107 | 96 | -> | Plus |
| 3L | 15159325..15159776 | 108..559 | 100 | -> | Plus |
| 3L | 15159839..15160332 | 560..1048 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:23 Download gff for
FMO02627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15152262..15152368 | 1..107 | 96 | -> | Plus |
| arm_3L | 15152425..15152876 | 108..559 | 100 | -> | Plus |
| arm_3L | 15152939..15153432 | 560..1048 | 97 | == | Plus |
