FMO02628.5prime Sequence
971 bp (971 high quality bases) assembled on 2008-05-23
> FMO02628.5prime
CAGTCGACATGGGCTACGATGTGAATCGCTTTCAGGGGGAGGTGGACGAG
GAGCTCACCTGTCCCATCTGCTCCGGAGTGCTTGAGGATCCGCTGCAGGC
CGTGATGTGCGAGCACGCCTTCTGCCGCGGATGCATTAACGAGTGGCTAA
CCCGCCAGCCCACTTGTCCGGTGGATCGAAATTCCCTGACTACTGCCAAC
TTGCGGGCAGTGCCTCGCATATTGCGCAACCTACTGTCCAGACTGTCAAT
CACCTGTGACAATGCGCCTTATGGCTGCACGGCTGTTCTCAAGCTAGACG
CCTACAATTCCCATTTGGACGAATGCATTCACAATCCGAAGCGACCATTT
CCCTGCGAGAAGGGATGCGGCTTTGACATACCCAAGGATGAGCTAAAGGA
CCACAACTGCGTGCGGGAGCTGCGCACTTTAATTGTCAAGCAGACGGAAA
AAATGGGTGAGCTCAAATCGGAGCTCACCGACCAGCAGCTGACTATCAAC
GAACTGAAGCGCGAGCTGCAGCTATTCAAGGACTTTATGCGTGCCATGCG
CGTCTCCAATCCTGCGATGCGGGCCATAGCCGACCAGATGGAGCGCGACG
AGGTGATCCGCTGGAGCAGCACACTGCCCCGGGCCAGGGTTACGCGCTGG
GGGGGAATGATCTCTACGCCCGACGATGCACTGCAGCTCATGATCAAGCG
CGCTTTGTCCGAGTCGGGCTGTCCGCCACACATCCTGGATAGTCTTATGG
AGTTCTGCCACGAGCGACGTTGGCCCCGTGGGCTCAGTTCGCTAGAGACA
CGTCAAACCAATCGTAGGATCTACGACAACTATGTGTGTCGACGCATTCC
AGGCAAGCAAGCTGTGCTCGTTTTGAGCTGCGACAATCCTCCACATGACT
GAGACGTCATGATCGATCCAGGTTTGGTCATGATCTTCGCCCATGGCATC
GAGGCAAGCTTTCTAGACCAT
FMO02628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| elgi-RB | 1534 | CG17033-RB | 124..1068 | 9..953 | 4680 | 99.8 | Plus |
| elgi-RA | 1611 | CG17033-RA | 201..1145 | 9..953 | 4680 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15957135..15957583 | 238..686 | 2245 | 100 | Plus |
| 3L | 28110227 | 3L | 15957637..15957805 | 685..853 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 15956920..15957065 | 96..241 | 730 | 100 | Plus |
| 3L | 28110227 | 3L | 15956750..15956840 | 9..99 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 15957864..15957967 | 850..953 | 425 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:45 has no hits.
FMO02628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:46 Download gff for
FMO02628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17033-RA | 201..1150 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:06 Download gff for
FMO02628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elgi-RA | 201..1150 | 9..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:01 Download gff for
FMO02628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| elgi-RA | 201..1150 | 9..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:01 Download gff for
FMO02628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15956923..15957065 | 99..241 | 100 | -> | Plus |
| 3L | 15956750..15956839 | 9..98 | 100 | -> | Plus |
| 3L | 15957139..15957583 | 242..686 | 100 | -> | Plus |
| 3L | 15957639..15957804 | 687..852 | 100 | -> | Plus |
| 3L | 15957867..15957972 | 853..959 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:06 Download gff for
FMO02628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15949850..15949939 | 9..98 | 100 | -> | Plus |
| arm_3L | 15950023..15950165 | 99..241 | 100 | -> | Plus |
| arm_3L | 15950239..15950683 | 242..686 | 100 | -> | Plus |
| arm_3L | 15950739..15950904 | 687..852 | 100 | -> | Plus |
| arm_3L | 15950967..15951072 | 853..959 | 95 | | Plus |
