FMO02629.5prime Sequence
1198 bp (1009 high quality bases) assembled on 2008-05-23
> FMO02629.5prime
CAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCAGCGGCATG
GCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGCGGCATCTG
CCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCGCGGTCGTC
CCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGCCTAGTACA
AGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCCAGTCAGCA
GAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAAGCGCTATA
CTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTGAGGCGGTG
ATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCGGGTGTCTC
CTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGAGGACTATG
GCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTTACCCCATT
CACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCATCCCACGGA
TCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCAGCACGAGC
AGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACAAGACGTGC
GGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAAAAGCGCTT
CGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTGCATTCGCA
CATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAGCTTGCCCC
GAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTCTGGATGGA
AGACCAGGAGGAAAAGGACAAATTGCTCAACGATTACCGCGCCGCTTTGG
GAGCAAAGGGACTGCAAATACTTTAAAAAGGAGAGGGCAAGTGCCCCTTT
GGTAACAGTGTTTCTACAGCACGCTTCTGCCCAACGGAGAAATCGTCGAT
GTGGGTTTGCGAACGCCACCCGAAGTTACAGAGCAGATGAATATCGATTA
CTGAATATAATCCTCTGGACTACGTTGAATCGGCGAGATATCATTGGCTG
AATGATTTCAGGAATAATCAGCTTCCAGGAGTTCGATACTCGATGAGAGC
CAGCTTTCTGAGCATCTCGCTAGAGACGCAGCGAGGGTCCGCAGGTAT
FMO02629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkrn1-RC | 2229 | CG7184-RC | 202..1318 | 5..1110 | 4965 | 97.5 | Plus |
| Mkrn1-RB | 2163 | CG7184-RB | 136..1252 | 5..1110 | 4965 | 97.5 | Plus |
| Mkrn1-RA | 2884 | CG7184-RA | 210..1326 | 5..1110 | 4965 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21532339..21533124 | 790..5 | 3915 | 99.9 | Minus |
| 3L | 28110227 | 3L | 21531811..21532032 | 1010..790 | 795 | 95.5 | Minus |
| 3L | 28110227 | 3L | 18722521..18722851 | 957..627 | 630 | 80.7 | Minus |
| X | 23542271 | X | 14777206..14777616 | 499..909 | 600 | 76.4 | Plus |
| X | 23542271 | X | 14775563..14775866 | 606..909 | 395 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:05 has no hits.
FMO02629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:47 Download gff for
FMO02629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7184-RB | 110..1145 | 1..1034 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:30 Download gff for
FMO02629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 207..1242 | 1..1034 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:28 Download gff for
FMO02629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 207..1242 | 1..1034 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:28 Download gff for
FMO02629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21531785..21532031 | 791..1034 | 95 | <- | Minus |
| 3L | 21532339..21533126 | 1..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:30 Download gff for
FMO02629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21524885..21525131 | 791..1034 | 95 | <- | Minus |
| arm_3L | 21525439..21526226 | 1..790 | 99 | | Minus |
